Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1004 ATGATGTCTAGAGGTTCATGGGTGCTAGAAGCTGATAGAGAACAACAACACTCCAATGGCAACAACAACAACATGAACAAGGATGAATTGAGTTCTTTGTGTGGTTTTAAACCCATGTTTGAGGTCAATAATGAAGAATGGTACATGACAAGTAATAACATTAACCAAAATCACATGATGTTCTCTCCCAACTTTGCTGACACAGATAACATATTGCTTCACTCATTAGACCCTTCCTCTTCTATTCTCACCAATCTTCATTCATCTCAGGTGCAGCACTTTCTGCCACCAAAACCCACTTTTTCCTCTCTTCTCAATACCAACCCTTTGGAGCATGGCTTTGATCACAATAACTATGAGGTTGGGTTTCTTGAGCCTCAAGCTTCTAATTCCAACAACACCTCAAATAATAATAACCAGTTAAGCACTCTTTCAAGTTATTTGAGCTTAGACCCTCATTTAGAAACTATGTGTATGAATATGATACCACAAGTACCACAAAGTAGCGTGGGCTTTGATGGTTTTCACAACTTTCAGGAGAGTTCTAGAAATGCTATGGTTCTGAATAGGTCAAACTCAAATATATTGAAACCCCTTGAAACTTTGCCTCAATCTGGTAGTGCAGTGCAACCAACACTTTTTCAGAAGAGAGCAGCTCTTTGGAACAAAAACTTGACAGATAAGAAGAGTAACTTGAGCAAGTGTGAAGTGCTTCAGGAAGTGAATTGTGATAAGAAAAGAAAGATGAGTAATAGAGAAGATCATGCAGAAGGTGGAAGTTTTGATGGGTCAGGAGAAGGATTGAATAATTATGATTCTGACAATGAAATAACTGAGAGTATTGAAAACAATAAGATGGTGGAAGAGAATGGAAAGAGTTGTGGAAATAGCTCAAATGCTAACAGCAATATCAGTGGTTTGGATCAGAAAGGAAAGAAGAAAAAGAATGGAATGCCTGCTAAGAATTTAATGGCTGAGCGCCGCAGAAGGAAGAAACTCAATGATAGACTCTATATGCTAAGGTCACTTGTTCCAAATATTAGCAAAATGGACAGGTCTTCAATCCTAGGGGATGCAGTTGAGTATTTAAAGGAACTTCTGAAAAGGATCAATGACCTTCATAATGAATTGGAGTCAACACCTTGTGGATCTTCACTCACAACTGCTTCAAGCTTTCCTCATTTGTCACCAACTCTACCTATACTACACAACCGTATCAAAGAACAACTTTGTCCCACCCCAAATGCCCAACCTCCTAGGGGTAACCTTTCGCCTGCTCTGGCAGGCTTATGTGGAGGGGCATGTTGGGAAGTTGAAGTTCGGGTGCGTGAAGGAAGAGTTATAAATATTCATATGTTTTGTGTCCGAAAACCTGGTCTATTGCTCTCAACTATGAAGACTTTGGATAACCTTGGATTAGACATTCAGCAAGGTGTCATAAGCTATTTCAATGGATTTGCTATGGATATTTTTCGAGCTGAGCAATGCATGGAAGATCAAGATATCCATCCAGAACAAATTAAAGCAGCACTTCTTGATTCAGCTGGTTTTCATAACATGACCTAG 1566 0.3927 MMSRGSWVLEADREQQHSNGNNNNMNKDELSSLCGFKPMFEVNNEEWYMTSNNINQNHMMFSPNFADTDNILLHSLDPSSSILTNLHSSQVQHFLPPKPTFSSLLNTNPLEHGFDHNNYEVGFLEPQASNSNNTSNNNNQLSTLSSYLSLDPHLETMCMNMIPQVPQSSVGFDGFHNFQESSRNAMVLNRSNSNILKPLETLPQSGSAVQPTLFQKRAALWNKNLTDKKSNLSKCEVLQEVNCDKKRKMSNREDHAEGGSFDGSGEGLNNYDSDNEITESIENNKMVEENGKSCGNSSNANSNISGLDQKGKKKKNGMPAKNLMAERRRRKKLNDRLYMLRSLVPNISKMDRSSILGDAVEYLKELLKRINDLHNELESTPCGSSLTTASSFPHLSPTLPILHNRIKEQLCPTPNAQPPRGNLSPALAGLCGGACWEVEVRVREGRVINIHMFCVRKPGLLLSTMKTLDNLGLDIQQGVISYFNGFAMDIFRAEQCMEDQDIHPEQIKAALLDSAGFHNMT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1004 521 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 73 520 - -
Lal19g1004 521 CDD ACT_UUR-ACR-like 447 514 - -
Lal19g1004 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
Lal19g1004 521 MobiDBLite consensus disorder prediction 308 330 - -
Lal19g1004 521 Gene3D - 308 380 IPR036638 GO:0046983
Lal19g1004 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 385 IPR036638 GO:0046983
Lal19g1004 521 PANTHER BHLH TRANSCRIPTIONAL FACTOR 73 520 - -
Lal19g1004 521 MobiDBLite consensus disorder prediction 288 330 - -
Lal19g1004 521 MobiDBLite consensus disorder prediction 12 26 - -
Lal19g1004 521 CDD bHLH_AtAMS_like 320 391 - -
Lal19g1004 521 MobiDBLite consensus disorder prediction 288 307 - -
Lal19g1004 521 SMART finulus 323 372 IPR011598 GO:0046983
Lal19g1004 521 MobiDBLite consensus disorder prediction 1 26 - -
Lal19g1004 521 Pfam Helix-loop-helix DNA-binding domain 324 366 IPR011598 GO:0046983
Lal19g1004 521 MobiDBLite consensus disorder prediction 248 274 - -
Lal19g1004 521 Coils Coil 360 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1004 Lal-Chr19 13911276 13914610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1004 36 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 42.886 3.63e-84 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal19g1004 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1004 - - lang:109358267 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1004 19 13911276 13914610 Lal19g1004 19 13911276 13914610 ECH
Lal19g1004 19 13911276 13914610 Lal21g0697 21 5537318 5541197 PCT
Lal19g1004 19 13911276 13914610 Lal4g0687 4 5390915 5393979 PCT
Lal21g0697 21 5537318 5541197 Lal19g1004 19 13911276 13914610 PCT
Lal4g0687 4 5390915 5393979 Lal19g1004 19 13911276 13914610 PCT