Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1003 ATGAGAGATCTAGAAGAAAAAGGAGAACAACAAATGGCGTTATCATCTGATGTTTCAATGAACGGAAGAGGAGAAATCAACAACAACAACGGTGGTGTTGGTGGTGGTGGAGAAGGTCAAAACGAAGCAGAACAAGCACTTTTCAAAGAGCTATGGCACGCGTGTGCAGGTCCTCTTGTAACAGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTCCCTCAAGGCCATATTGAACAGGTTGAAGCTTCAACTAATCAGGTAGCAGATGAACACATGCCTGTGTATGATCTACGTTCCAAGATCCTATGTCGGGTCATGAACGTAGTGCTGAAGGCCGAGCCGGACACCGATGAGGTGTTTGCTCAGGTGACCTTAGTTCCGGAGTCAATTCAAGATGAAAGTAAAGTTGAGAATGAGGCGCCACCATCGCTGCCGCCAAGGTTTCATGTGCATTCGTTTTGTAAAACCCTGACTGCCTCTGATACAAGTACTCATGGAGGGTTTTCGGTTCTGAGGCGACATGCCGATGAATGCCTACCTCCTCTGGACATGACAAAGCACCCACCAACTCAGGAATTGGTGACCAAGGACTTGCATGGGAATGAGTGGCGATTCAAGCATATATTTCGTGGTCAACCACGTAGGCACTTGCTACAAAGTGGTTGGAGTGTTTTTGTCAGCTCGAAGAGGCTGGTTGCTGGGGATGCATTTATATTTATAAGAGGTGAGAATGGTGAACTTAGAGTTGGTGTCCGGCGTGCAATGAGGCAACAGAGTAATGTTCCATCGTCGGTTATCTCTAGCCACAGCATGCATCTCGGTGTACTTGCAACTGCTTGGCATGCTGTCTCAACTGGGACAATGTTCACTGTTTATTATAAACCTAGGACCAGTCCCGCTGAATTTATTGTTCCATATGATCAGTATATGGAGTCTCTCAAAATTAATTACACCATAGGAATGCGGTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGACCCCAAAAAGTGGCCTGATTCCAAATGGAGAAGTCTCAAGGTTGTGAGATGGGATGAAATGTCTAACATACCTCGTCCTGATAGAGTTTCTCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTAAATCCTCTTTCAATGCCCAGACCTAAGAGGCCTCGGCCTATAGTGGTTCCGTCATCATCAGATTCATCTGTTCTTACTCGAGAAGGAGCGTCATCTAAAGTGAGTGTAGACCCTTTGCCTGCAAGTGGATATCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAAATTGGTAGAAGGCAACAAGTCTGATAATGGCGAGAAGCTTGTTGTGTTGCCACCTGCAGTAGATGATGAGAAGATCGATGCTCTTTATACTCCAAGAAAATATGGATCAGAGGGCCGGATGTCGATGGGGAGACTTGAAACATATTCAGATCTACTTTCGGGCTATGGAACCAATATAGATCTTTCTTCGCATCTATCTTTGCTTGATCAAATTGGTCATGTAGCTAACCCTGCTAAGAAACATTTGTTGGATCGCGAAGGAAATTTTAATGTGATGGGTAGTCCATGGTCTGTGATCCCTTCTAGTTTATCACTCAACCTCGTGAACTCTAATGCAAAAGGTGTGCAGGGTTGTGATAGAACTTATCCAGCTCAACGGTATTCTAGGCATAGTGCATTTGGTGAATATCCTGTGCTTCATCATGGTCATAAATTTGAGCATCCACATGGAAACCCGATGATGCTACCACCACCCACAACTCAATATGAGAGTCCCTGTTCTAGGGAACTGTTGCTGAAATCAATATCAGCCAATACTTCTGAAGTTGCGAAACCAAAAGATGGCAACTGTAAGCTATTTGGCTTCTCACTTCTCAGTAGCCCCACTGCATCAGACACTTCTATGTCACATAGAAATGTAGTCAATGAGCCATTTGGTGCCTTGCATCATACTTTCGAAAATGATCAGAAGTCTGAACATTCGAGGGTTTCCAAACCTGCGGATGTTGTAGTTGTAACTGATGACCATGAGAAGCTTTTACAGACTTCTCAATCACACCTGAAAAATGTGCAACCCAAACCACACAGCACCTCTGCTAGGAGCTGCACTAAAGTTCATAAGAAGGGGATTGCGCTGGGTAGGTCTGTCGATCTTACAAAGTTCAGTGGCTATGATGCATTAATTGCCGAATTGGACCAACTGTTTGAATTTGGAGGTGAATTAACTTCTCCAAACAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTGGTTGGTGATGATCCATGGCCGGAGTTTTGTGCCATGGTCTGCAAAATGTATATCTACCCAAAAGAAGAGATTCAGAAAATGAACCCTGGTACCCTAAGTTCAAAAAATGAAGAGAACCAATCAGCTAGCGAAGGTGCCGATGGACAAGAGATTAAATATCAGCCCCAGCATCCAGCTTCTGATACCTGA 2541 0.4467 MRDLEEKGEQQMALSSDVSMNGRGEINNNNGGVGGGGEGQNEAEQALFKELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLRSKILCRVMNVVLKAEPDTDEVFAQVTLVPESIQDESKVENEAPPSLPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKHPPTQELVTKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFIRGENGELRVGVRRAMRQQSNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPYDQYMESLKINYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKKWPDSKWRSLKVVRWDEMSNIPRPDRVSPWKIEPALAPPALNPLSMPRPKRPRPIVVPSSSDSSVLTREGASSKVSVDPLPASGYPRVLQGQEFSTLRGKLVEGNKSDNGEKLVVLPPAVDDEKIDALYTPRKYGSEGRMSMGRLETYSDLLSGYGTNIDLSSHLSLLDQIGHVANPAKKHLLDREGNFNVMGSPWSVIPSSLSLNLVNSNAKGVQGCDRTYPAQRYSRHSAFGEYPVLHHGHKFEHPHGNPMMLPPPTTQYESPCSRELLLKSISANTSEVAKPKDGNCKLFGFSLLSSPTASDTSMSHRNVVNEPFGALHHTFENDQKSEHSRVSKPADVVVVTDDHEKLLQTSQSHLKNVQPKPHSTSARSCTKVHKKGIALGRSVDLTKFSGYDALIAELDQLFEFGGELTSPNKDWLIVYTDNEGDMMLVGDDPWPEFCAMVCKMYIYPKEEIQKMNPGTLSSKNEENQSASEGADGQEIKYQPQHPASDT 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1003 846 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Lal19g1003 846 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Lal19g1003 846 MobiDBLite consensus disorder prediction 12 28 - -
Lal19g1003 846 MobiDBLite consensus disorder prediction 407 421 - -
Lal19g1003 846 CDD B3_DNA 151 253 IPR003340 GO:0003677
Lal19g1003 846 ProSiteProfiles PB1 domain profile. 723 805 IPR000270 GO:0005515
Lal19g1003 846 Gene3D - 150 255 IPR015300 -
Lal19g1003 846 Gene3D - 718 812 - -
Lal19g1003 846 SUPERFAMILY DNA-binding pseudobarrel domain 149 282 IPR015300 -
Lal19g1003 846 MobiDBLite consensus disorder prediction 812 846 - -
Lal19g1003 846 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 32 830 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal19g1003 846 MobiDBLite consensus disorder prediction 390 404 - -
Lal19g1003 846 PANTHER AUXIN RESPONSE FACTOR 2 32 830 - -
Lal19g1003 846 MobiDBLite consensus disorder prediction 812 831 - -
Lal19g1003 846 SMART B3_2 153 255 IPR003340 GO:0003677
Lal19g1003 846 MobiDBLite consensus disorder prediction 1 41 - -
Lal19g1003 846 Pfam AUX/IAA family 711 805 IPR033389 -
Lal19g1003 846 SUPERFAMILY CAD & PB1 domains 724 800 - -
Lal19g1003 846 Gene3D - 316 387 - -
Lal19g1003 846 Pfam Auxin response factor 279 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal19g1003 846 MobiDBLite consensus disorder prediction 388 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1003 Lal-Chr19 13905353 13910154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1003 15 836 B3 DNA Binding Superfamily AT5G62000 61.467 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal19g1003 AUX_IAA 2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1003 - - gmx:100815956 1195.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1003 19 13905353 13910154 Lal19g1003 19 13905353 13910154 ECH
Lal14g1425 14 15492135 15497534 Lal19g1003 19 13905353 13910154 LSH
Lal7g0855 7 15115099 15119902 Lal19g1003 19 13905353 13910154 LSH
Lal19g1003 19 13905353 13910154 Lal17g0818 17 6018799 6023878 PCT
Lal19g1003 19 13905353 13910154 Lal4g0686 4 5384525 5389705 PCT