Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1002 ATGCTTTTCGCGAAGCTTGATGACTCTCCAATGTTTCGGCAACAGCTTCAATGCTTGGAGGACAGTGCTGATTCATTACGTACTAGATGCTGGAAATTCTACAAAGAATGTAGAAAGTATACGGAAGGGCTTGGAGAGGTATATGATAGGGACATCGCATTTGCAAACGCCCTTGAAAATTTTAGAGGAGGGCATAGTGATCCTCATTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATATACTATTGCTTTGAGAGAAATCAGTACATTCAAGGAACTTCTTCGGTCACAGGTAGAGCACCTGCTCAATGAGCGGTTACTACACATTATCAATGTTGACGTCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGACAAAGCTTCCCTTGTGTATGACCAGGCACGTGAAAAATTTATGTCACTGAAGAAAAGCACTAAGATTGATGTTGCCACAGTCATAGAAGAGGAATTGCAAAATGCAAGAACCTCATTTGAGGAAGCCCGTTTCAATCTGGTCAGTGCTCTCAATAACATTGAGGCCAAGAAAAATTTTGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTACATCAGATGGAGCCTTTCCTTAGCGAGGTTTTGGATTATGTACAACACTCAAGAGAAAGTTACAGTAAGGAGGAGGTTTCTCTTTATAGAAGAATGGAAGAGTACAAAAGACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAACGGCCCCTATGGTTCTTCTCCTAGTGGAGACTCTGCACATCCTTTTTCTAGGATATCAAATGATGTGGTAGATGTAGTAATGGAATCTGCTGCAAACGGAAAGGTTCAAATCATTAGACAAGGGTATCTTTCAAAACGATCCTCAAATTTGCGGGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGCCGAGGAACGCTGTACTACTATCGTAAACCGTGGAATGGGTCATATGGCGGCAATCAACAATCTGCACATAAAAACAGTGCCAATGAAAATGGTTCGGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTTGCACGTCATACAGTAAACTTGCTGACATCAACAATCAAGGTTGATGCAGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCTCCAGCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGACTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACATTGGGAACGCCTCCCTCAGCTGACTCAGAAAACAGTGACCATTACTCTGCAAACAAGAATGATATGTTAGAAAGTTCTCTACATGATGGCCAGACTGTGACTGACAAGTATGCATCCAATAATGGCTCCCCTAATCACCACTTGCGTGCATCTAAAAGTATGCACTTGCACAAACACAGTCTAAAAATTGAAAAGCCAATTGATATTCTTAGAAGGGTGAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCAGAACCTGACTGGGCTTCCTTAAATCTTGGCATCCTTGTATGCATTGAATGCTCTGGTATTCATCGTAATCTTGGTGTACATATTTCAAAAGTAAGGTCACTTACACTTGATGTGAAAGTCTGGGACCACTCTGTCTTAACCATGTTTAAGTCGCTGGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGCTGTTACATTCAACTGATGACATGCCTGATGGTTCATCCAAGGCCAACAGTGACATGCTACTTCATGCAAGAAAACCAAAACATGATGATTCTATTTCATTAAAGGAGAGGTTCATTCACGCAAAGTATTCCGAGAAAATCTTTGTTTGCCGGACGAAGAAAAACGACCCTCCCCTTCCATTAGCACAACAGGTGAGGGAAAGCATCTATGCCAATGACAAAAAAGCAGTATACAGGCACATTGTCAAGTCAGATATTGATGTCAATGCCATCGGCGGAAAAGCATTATCTGGTGAACCTTTCAACATGGCTTTTTCAAGTAATTCAGACATTTCTTCTCACAGTGAAAATCAGTTTGTTGATGACATACAAGATGGTTCTACTGTCCTTCACCTGGCATGTCAAACTGCTGACATTGGCATGGTGGAGCTGCTCCTACAGTATGGGGCAGATATAAATGCCTGTGATTCAAAAGGCCGAACACCACTACATTGCTGTACTATCAGTGGGAAGAATGCAGCTGCGAAATTGCTTATTATGAGGGGAGGCAATCCACATGTTGCAGATAAAGAAGGCAACACTCCTCTTAAGCTTGCATCAGAAACCAGCTCTGTTGCCAATGAAATGGTTGCTCTCTTAACAAGCAAATGA 2403 0.4178 MLFAKLDDSPMFRQQLQCLEDSADSLRTRCWKFYKECRKYTEGLGEVYDRDIAFANALENFRGGHSDPHFVALGGPVMTKYTIALREISTFKELLRSQVEHLLNERLLHIINVDVHEVKEARKRFDKASLVYDQAREKFMSLKKSTKIDVATVIEEELQNARTSFEEARFNLVSALNNIEAKKNFEFLEAVTGIMDAHLRYFQQGYQLLHQMEPFLSEVLDYVQHSRESYSKEEVSLYRRMEEYKRQVYEESRLSLNGPYGSSPSGDSAHPFSRISNDVVDVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGTLYYYRKPWNGSYGGNQQSAHKNSANENGSGLLSRWLSSHYHGGVHDERSVARHTVNLLTSTIKVDADQSDLRFCFRIISPAKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGTPPSADSENSDHYSANKNDMLESSLHDGQTVTDKYASNNGSPNHHLRASKSMHLHKHSLKIEKPIDILRRVSGNDKCADCGKPEPDWASLNLGILVCIECSGIHRNLGVHISKVRSLTLDVKVWDHSVLTMFKSLGNLFANSVWEELLHSTDDMPDGSSKANSDMLLHARKPKHDDSISLKERFIHAKYSEKIFVCRTKKNDPPLPLAQQVRESIYANDKKAVYRHIVKSDIDVNAIGGKALSGEPFNMAFSSNSDISSHSENQFVDDIQDGSTVLHLACQTADIGMVELLLQYGADINACDSKGRTPLHCCTISGKNAAAKLLIMRGGNPHVADKEGNTPLKLASETSSVANEMVALLTSK 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1002 800 Gene3D - 286 438 IPR011993 -
Lal19g1002 800 CDD BAR_SFC_plant 15 215 IPR035670 -
Lal19g1002 800 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Lal19g1002 800 CDD ArfGap 503 627 - -
Lal19g1002 800 ProSiteProfiles BAR domain profile. 1 236 IPR004148 GO:0005515|GO:0005737
Lal19g1002 800 Pfam Ankyrin repeats (3 copies) 714 797 IPR002110 GO:0005515
Lal19g1002 800 SUPERFAMILY BAR/IMD domain-like 6 316 IPR027267 -
Lal19g1002 800 ProSiteProfiles PH domain profile. 293 429 IPR001849 -
Lal19g1002 800 ProSiteProfiles Ankyrin repeat region circular profile. 742 774 - -
Lal19g1002 800 SMART PH_update 294 431 IPR001849 -
Lal19g1002 800 Pfam Putative GTPase activating protein for Arf 503 633 IPR001164 GO:0005096
Lal19g1002 800 Pfam PH domain 295 428 IPR001849 -
Lal19g1002 800 Gene3D Arf GTPase activating protein 481 640 IPR038508 -
Lal19g1002 800 SMART arf_gap_3 500 640 IPR001164 GO:0005096
Lal19g1002 800 SUPERFAMILY PH domain-like 203 428 - -
Lal19g1002 800 Coils Coil 118 138 - -
Lal19g1002 800 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 641 IPR001164 GO:0005096
Lal19g1002 800 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Lal19g1002 800 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Lal19g1002 800 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Lal19g1002 800 SUPERFAMILY ArfGap/RecO-like zinc finger 500 634 IPR037278 -
Lal19g1002 800 Coils Coil 227 247 - -
Lal19g1002 800 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Lal19g1002 800 PANTHER CENTAURIN/ARF 1 799 IPR045258 GO:0005096
Lal19g1002 800 SMART ANK_2a 709 738 IPR002110 GO:0005515
Lal19g1002 800 SMART ANK_2a 742 771 IPR002110 GO:0005515
Lal19g1002 800 SUPERFAMILY Ankyrin repeat 707 798 IPR036770 -
Lal19g1002 800 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 799 - -
Lal19g1002 800 ProSiteProfiles Ankyrin repeat profile. 742 774 IPR002110 GO:0005515
Lal19g1002 800 Pfam BAR domain of APPL family 6 233 - -
Lal19g1002 800 ProSiteProfiles Ankyrin repeat region circular profile. 709 740 - -
Lal19g1002 800 CDD PH_ACAP 296 433 - -
Lal19g1002 800 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Lal19g1002 800 Gene3D - 655 800 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1002 Lal-Chr19 13879876 13890772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1002 504 633 C2H2 Transcription Factor Family AT4G21160 42.748 1.06e-22 98.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1002 19 13879876 13890772 Lal19g1002 19 13879876 13890772 ECH
Lal19g1002 19 13879876 13890772 Lal17g0817 17 5994251 6003753 PCT
Lal19g1002 19 13879876 13890772 Lal21g0695 21 5504403 5515813 PCT
Lal17g0817 17 5994251 6003753 Lal19g1002 19 13879876 13890772 PCT
Lal21g0695 21 5504403 5515813 Lal19g1002 19 13879876 13890772 PCT