Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0998 ATGCCTTTTCAAATGATGGATCGGAGGGGTATTTCTGCCTCATCCCATTTCTTTGATGACAATTCCTGTCATTCTGAGAGCAATGTTGGATTGCAGAAACAAAAATCCATTCATGATCAATACCAACAAGGAATGAATGGAATGCGGACATCACCTAGCAGCATTTTGATTGATTCAGCATCCCTTGGTATAAACGCAAAATCTGGCTTGCGATTGTCACAGACTAGTCTATCTGAGGAGACTACGGAAAAGCTAAATTTTGGTGGAGAAGAAGGCGTTGTTGATGTTTTGAAAGATTTGAAAGAATCATTGCATTATCGTCCCATATCATGGTCTGATGTGCATATGCAGGCAGCACCTGCATCATATGGTTTAATTGGGAACAAGATTGGCACCAACGCTGTCCCTTGTGAAAGTAGTCTATTCTCAAGCTCTTTGTCTGATATATTTGGTCAAAAGTTGAGGTTAATGGGGAAAGATGTTCTGTCCGATCAGTCCATTAGTGTTGATTCCCTTCCTCAGGAAGAACCTTATAAATCTATTGAGGAAGACATTATAGGGAATCTCCTTTCTGATGAAGATGATCTGTTTTCTGGTGTCATTGATGAGTTAGGATACAGTACTCATGCCAGAACGAATGACGACTTTGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATACACATCTATATCCAGGAAAAGTAACAAGACGTTGGGATGGAGATTCTGGTTTCTATAGAGGTTCTAAAGGGAAACTTTCTTTTGGTGAACAACCTTGTAGAACACTTTTTGTTCGAAACTTTAATAGCAATGTTGAAGACAATGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATGTATACAGCCTGTAAGCATCGTGGGTTTGTTATGATTTCTTATTATGACCTGAGAGCAGCACAAAATGCAATGCAAGCACTTCAAAACAGGCCATTGAGGTCAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGCCACGGTACACTGATGCTATCTGGTCTTGATTCATCTGCTTTAAATGATGAGCTTAGACGGATTTTTGGGTTTCATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATCTCAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCATTCACTTAACAGGATTGGCATTGCCGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTCTGTTGCAGCAGTCTCATAAGGGGCAAGATGAACCAAGTCTTGGTCAAAGTATTATTGACAACTTATCATTAACACCGAAGGTTGGATCTGGCTGCTTGGAAAATGGATATAATCAGGGTTTTCAATCTGCAATGCGGCAACCGTTGAATGCATTTGTTGATAATGCACTCTTTCGAGCGAATTCTAGCATTCAAAACACAGTCGGAGGGGCATCTGCTGCAAAAGTGTCCGGCTTCCGTGAGTCCAGTGACTTTGCTGATGGAGTGAAATTTGCATCCAGTCCTAGATTTCATCCTCATTCCTTACCTGAGTATCATGGTAGTTTAGCTAATGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACATGGCCAGCAATCCGGGTACAGCAACAACAGAAGCCTCTGACGGCAGGCACATCCAGGGAATGGGCTCAACTAGGAACGTAGCAGAGTTTAATGCAGGAGGAAATGGAATCCACCCACATAACGGGCTTTATCGTATGTGGAACAACTCCAGTTTGCATCAGCAACCTTCACCTGATGCCGTGCTCTGGCAGAAAACGCCATCACTTGTTAATGGTGCTTGTGCTCCGGGCCTTCAACAGATGCCAAGTTTTGCCAGAACACGGCCTCAGATGCTGAGAAAACCACATATGGACCATGTTGGATCAGCACCAGTTGTTATAGCCTCGCCCTGGGAAATGCAACATTCTATCTTGGGAGAGTCCCCTGAAGCTTCTGGTTTTCTCTTGGGTTCTTTAGGAAGTGGCGGTTTTCATGGTTCCTGGCAAATGCATTCACCAGATTTATCTTCTCACATGTTTTCTCATGTTGGTGGGAATAGCACCGAACTGACGCCGAATGCTGTACAGTCTTCTTCTAAGCAGTTGTCACATGTTTCCTCTGGGAGGCAACCTACTTCATTGCCGAAATTTGATTCTACCAATGAACGTATGAAAAATCTTCATCATCGTAGTAGAAGTGAAGCGAACACTAAAAATGCTGATAAAAAACAGTTTGAGCTCGACCTAGGTAGCATATTGCGTGGGGAAGACAGCCGAACAACGCTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTTGTTGTTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTCTATTTACCAATCGATTTCAGGAACAAATGTAATGTTGGCTATGCATTCATAAATATGATCGATCCTGCTCAAATTGTTCCTTTCTTCCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGCGAAAAAGTAGCCTCACTTGCGTATGCTCGAATTCAAGGAAAAACTTCTCTTATTTCTCATTTCCAGAATTCAAGCTTGATGAGTGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATATGAAGCCTTTCCCCGTAGGCGCCAATGTTAGAGCGAGACCTGGAAAATCTCGCACAGGCTGCAACGAGGAGAACAGCGGCCAAGCAAGTTCTTCAATTCTAGCAACCGGAGAAGAATCTGCTAATGCAAAAGACTCTTCATTCAGCTCGGATTGA 2862 0.4228 MPFQMMDRRGISASSHFFDDNSCHSESNVGLQKQKSIHDQYQQGMNGMRTSPSSILIDSASLGINAKSGLRLSQTSLSEETTEKLNFGGEEGVVDVLKDLKESLHYRPISWSDVHMQAAPASYGLIGNKIGTNAVPCESSLFSSSLSDIFGQKLRLMGKDVLSDQSISVDSLPQEEPYKSIEEDIIGNLLSDEDDLFSGVIDELGYSTHARTNDDFEDFDLFSSGGGMELEGDTHLYPGKVTRRWDGDSGFYRGSKGKLSFGEQPCRTLFVRNFNSNVEDNELKALFEQYGDIRTMYTACKHRGFVMISYYDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSALNDELRRIFGFHGEIKEIYEYPEMNHLKFIEFYDVRAAEAALHSLNRIGIAGKQIKLEPGHPSLLQQSHKGQDEPSLGQSIIDNLSLTPKVGSGCLENGYNQGFQSAMRQPLNAFVDNALFRANSSIQNTVGGASAAKVSGFRESSDFADGVKFASSPRFHPHSLPEYHGSLANGSPYNFSSTISNMASNPGTATTEASDGRHIQGMGSTRNVAEFNAGGNGIHPHNGLYRMWNNSSLHQQPSPDAVLWQKTPSLVNGACAPGLQQMPSFARTRPQMLRKPHMDHVGSAPVVIASPWEMQHSILGESPEASGFLLGSLGSGGFHGSWQMHSPDLSSHMFSHVGGNSTELTPNAVQSSSKQLSHVSSGRQPTSLPKFDSTNERMKNLHHRSRSEANTKNADKKQFELDLGSILRGEDSRTTLMIKNIPNKYTSKMLVVAIDEQCRGTYDFLYLPIDFRNKCNVGYAFINMIDPAQIVPFFQAFNGKKWEKFNSEKVASLAYARIQGKTSLISHFQNSSLMSEDKRCRPILFHTDGPNAGDMKPFPVGANVRARPGKSRTGCNEENSGQASSSILATGEESANAKDSSFSSD 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0998 953 Gene3D - 351 442 IPR012677 -
Lal19g0998 953 Pfam RNA recognition motif 2 781 877 IPR007201 -
Lal19g0998 953 CDD RRM1_MEI2_like 267 341 IPR034453 -
Lal19g0998 953 SMART rrm1_1 353 421 IPR000504 GO:0003723
Lal19g0998 953 SMART rrm1_1 783 859 IPR000504 GO:0003723
Lal19g0998 953 SMART rrm1_1 268 336 IPR000504 GO:0003723
Lal19g0998 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Lal19g0998 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Lal19g0998 953 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 947 - -
Lal19g0998 953 Gene3D - 254 350 IPR012677 -
Lal19g0998 953 MobiDBLite consensus disorder prediction 708 742 - -
Lal19g0998 953 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 947 - -
Lal19g0998 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Lal19g0998 953 CDD RRM3_MEI2_like 784 869 IPR034454 -
Lal19g0998 953 MobiDBLite consensus disorder prediction 898 953 - -
Lal19g0998 953 MobiDBLite consensus disorder prediction 708 743 - -
Lal19g0998 953 MobiDBLite consensus disorder prediction 921 953 - -
Lal19g0998 953 SUPERFAMILY RNA-binding domain, RBD 783 867 IPR035979 GO:0003676
Lal19g0998 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Lal19g0998 953 SUPERFAMILY RNA-binding domain, RBD 264 422 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0998 Lal-Chr19 13856102 13864621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0998 262 418 Eukaryotic Initiation Factors Gene Family AT3G16380 24.719 4.31e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0998 - - gmx:106798747 1350.88