Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0984 ATGGTTAGGTCTCCTTGTTGTGAGAAAGAGCATACAAGAAAAGGACCTTGGAGCAAAGAAGAAGATGATCGACTCACTAGACACATCATGTTTCATGGTATAGGTCGATCATGGAGGGTTCTTCCTAGAGAAGCAGGATTGAACAGATGTGGCAAGAGTTGTCGGTTAAGATGGATTAATTATCTGCAACCAGGTGTTAAGCGAGGAAACTTCACTTTACTAGAAAATATAATGATTATGAACCTGCATGCCCAGCTCGGAAACAATATTTGTCTCTGTATTAATGAAGATGATCTTTACTCCGTTGTAGAGGGTCGGTTAGATATGAAGTTCAAACGTCATTGTGCATGGTTTCTCAGGTGGTCTACGATAGCGGGAAGGTTACCTGGTAGAACAGACAACGAGATCAAGAATCATTGGAACACCAACCTCAAACATTTCCTCTTAGCTGATGGAACCGATCCCAGAACTCATAAACCACTCTCCACCGCCATTTTCACCACCACAGCTCCACCTAACAACAGAATCAACTCCTCCGACACCACCAGAACTCCACCCACTGATAGTACAATTTCAATGTCTGTGGTTACAACAAACAACAGCAGCACTACCACTACCATGACAAAGGAAGTTCAAGTTGAATCCTATTCTAAACTAAACTTGGAACTCTCCTTAGCACTTCCCTCTCACTAG 693 0.4271 MVRSPCCEKEHTRKGPWSKEEDDRLTRHIMFHGIGRSWRVLPREAGLNRCGKSCRLRWINYLQPGVKRGNFTLLENIMIMNLHAQLGNNICLCINEDDLYSVVEGRLDMKFKRHCAWFLRWSTIAGRLPGRTDNEIKNHWNTNLKHFLLADGTDPRTHKPLSTAIFTTTAPPNNRINSSDTTRTPPTDSTISMSVVTTNNSSTTTTMTKEVQVESYSKLNLELSLALPSH 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0984 230 Gene3D - 6 68 - -
Lal19g0984 230 SMART sant 67 146 IPR001005 -
Lal19g0984 230 SMART sant 13 64 IPR001005 -
Lal19g0984 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 148 IPR017930 -
Lal19g0984 230 CDD SANT 16 62 IPR001005 -
Lal19g0984 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 90 - -
Lal19g0984 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 120 214 - -
Lal19g0984 230 CDD SANT 120 144 IPR001005 -
Lal19g0984 230 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lal19g0984 230 PANTHER BNAANNG06630D PROTEIN 120 214 - -
Lal19g0984 230 PANTHER BNAANNG06630D PROTEIN 1 90 - -
Lal19g0984 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Lal19g0984 230 ProSiteProfiles Myb-like domain profile. 63 144 IPR001005 -
Lal19g0984 230 Pfam Myb-like DNA-binding domain 68 144 IPR001005 -
Lal19g0984 230 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lal19g0984 230 SUPERFAMILY Homeodomain-like 14 145 IPR009057 -
Lal19g0984 230 Gene3D - 70 145 - -
Lal19g0984 230 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0984 Lal-Chr19 13745934 13747184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0984 1 228 MYB Transcription Factor Family AT4G38620 43.568 2.80e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal19g0984 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0984 K09422 - sind:105176094 189.889