Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0980 ATGGAAAAGTACGAGACTGTTAAAGATTTAGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGAGACTAAGGAGTTTGTTGCCATGAAATACATCGAGCGTGGCCATAAGGTGGTTTTGACCCCAACTCATTTAGCAATAGTGATGGAGTATGCAGCAGGAGGAGAACTCTTTGAGAGGATTTGCAATGCTGGCAGATTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTTATATCTGGGGTTCATTACTGTCATGCCATGCAAATATGTCACAGAGATTTGAAGCTAGAAAATACACTTTTAGATGGAAGCCCTGCACCTCGCTTGAAAATATGCGACTTCGGTTATTCCAAGTCATCTTTGCTTCATTCACTACCCAAATCAACTGTTGGAACCCCTGCTTATATAGCACCAGAAGTTCTTTCTAGGAGGGAGTATGATGGCAAGTTGGCTGATGTATGGTCATGTGGAGTGACTCTTTATGTAATGCTGGTTGGAGCATATCCCTTTGAGGATCATGAAGACCCTAGGAATTTTAGGACAACAATTCAGCGTATAATGGCCGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGACACATCCTTTCTCGTATATTTGTTGCAAATCCTTTGAGGAGAATCACACTGAAGGAAATTAAGAACCACACATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATCTATTACCAGAGAAGAGGCAACCCAAGTTTTTCTGTTCAAAGTGTGGAACAGATAATGAAAATTGTGGAGGAAGCAAGAGAACCTCCTCTAGTATCTATGCATGTCAAAGGCTTTGGCTGTGAAGGTGTAGAAGAAGAAGAAGAAGAAGAAGAAGTGGAGGAAGATGAGTATGAGAAAAGGGTAAAAGAGGTTCATGCAAGTGGAGAATTTCATATCAGTTAA 972 0.4105 MEKYETVKDLGAGNFGVARLMRNKETKEFVAMKYIERGHKVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSLPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDHEDPRNFRTTIQRIMAVQYKIPDYVHISQDCRHILSRIFVANPLRRITLKEIKNHTWFLKNLPRELTESAQAIYYQRRGNPSFSVQSVEQIMKIVEEAREPPLVSMHVKGFGCEGVEEEEEEEEVEEDEYEKRVKEVHASGEFHIS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0980 323 PANTHER SERINE/THREONINE KINASE 2 40 - -
Lal19g0980 323 PANTHER SERINE/THREONINE KINASE 40 317 - -
Lal19g0980 323 Coils Coil 290 313 - -
Lal19g0980 323 MobiDBLite consensus disorder prediction 292 323 - -
Lal19g0980 323 SUPERFAMILY Protein kinase-like (PK-like) 2 267 IPR011009 -
Lal19g0980 323 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 2 40 - -
Lal19g0980 323 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 40 317 - -
Lal19g0980 323 MobiDBLite consensus disorder prediction 292 306 - -
Lal19g0980 323 SMART serkin_6 4 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g0980 323 Pfam Protein kinase domain 40 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g0980 323 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lal19g0980 323 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g0980 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Lal19g0980 323 Gene3D Transferase(Phosphotransferase) domain 1 1 285 - -
Lal19g0980 323 MobiDBLite consensus disorder prediction 307 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0980 Lal-Chr19 13717213 13721247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0980 3 238 CBL-interacting serine-threonine protein kinases AT4G24400 38.971 1.94e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lal19g0980 Pkinase 1.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0980 K14498 - gmx:100804018 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0980 19 13717213 13721247 Lal19g0980 19 13717213 13721247 ECH
Lal14g1408 14 15363921 15366547 Lal19g0980 19 13717213 13721247 LSH
Lal19g0980 19 13717213 13721247 Lal21g0680 21 5278416 5285124 PCT
Lal19g0980 19 13717213 13721247 Lal4g0657 4 4972359 4976021 PCT
Lal21g0680 21 5278416 5285124 Lal19g0980 19 13717213 13721247 PCT
Lal4g0657 4 4972359 4976021 Lal19g0980 19 13717213 13721247 PCT