Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0979 ATGAATTCTCCAACTCATTCCCCTTCATCTTCTTCCTGCTCCTATGTTCTTCCTCCTCCATGCCTCACTCATGCTTCTCGTAATTTCAAGTTTCCTCTATCGTTGTCGCAGGCGATCTGTAGCTCTCAAAAGATGTATCAAAGCTCCGGAGGCCATACGGAGGCTTCAACTAACACCAATCCTTTGAAAATCTACATGGCGGGTAGATGTTCTCTGGGATGGTCTGAAGCACAACCCTTGGTTTCCAAGCAATCACTCAACAGGAAGTTGTTGCCGGTGGAAGCTTTAGTAACTCCAACAGCTCAAGATGTTTCTGAGACGCCTTTTATTGGTGATGATAAGATTGGAGTGTTATTGTTAAACCTTGGAGGTCCAGAGACTCTAGAGGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCTGACCCAGCTGAAGAGTTGAGGAAATCTCTTTGGGAAAAGAATGTCCCAGCCAACGTGTATGTTGGGATGCGTTACTGGCATCCATTCACCGAAGAAGCTATTGAACAGATTAAAAAAGACGGAGTTACAAAGCTTGTTGTGCTTCCGCTTTATCCACAATTTTCAATATCAACCAGCGGTTCAAGTCTGCGTCTCTTGGAGAGTATATTCCGAGAGGATGAGTATCTAGCCAACATGCAACACACAGTGATACCTTCATGGTACCAGCGTGAAGGATACGTAACGGCCATGGCAAATTTAATTGAAAAGGAGCTGAAAGGTTTTGACTCCCCTAAGGAGGTCATGATATTCTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGATGCTGGTGATCCATACAAAGCAGAGATGGAAGAATGTGTGGATTTGATCATGGAAGAACTTGAGAAAAGAAAGATAAATAATGCATACACCCTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGACACAATAGTTGAACTTGGGAAAACGGGATTGCTGCCTTCTGTCTTTACCCCTACCCCAAGGCCCACTGAGAGAATTAGTGACACTGCTATTCTGTTTTACTGCTGCTTGATTCACAGCTTTGTCAGTGAGCATATTGAAACTCTAGAAGAAATTGATGTTGAGTACAAAGAGTTGGCTCTAAAATCTGGCATAGAAAATTGGGGTCGTGTTCCTGCTCTAGGATGTGAACCAACCTTCATTTCAGATTTGGCTGATGCTGTGATTGAGAGTCTTCCATATGTTGGTGCCATGGCAGTTTCAAACCTTGAAGCTCGACAGTCTTTGGTTCCCCTCGGCAGTGTAGAAGAGCTATTGGCAGCATACGACTCCCAACGTAAGGAGTTGCCACCACCAATAATGGTGTGGGAATGGGGTTGGACAAAGAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTGGCTGTGCTTCTTCTGGTGTTTTTCGAAGTCAGTACTGGTCAGGGATTTCTGCACCAGTGGGGAATATTTCCCTTGATTAGGTGA 1500 0.4427 MNSPTHSPSSSSCSYVLPPPCLTHASRNFKFPLSLSQAICSSQKMYQSSGGHTEASTNTNPLKIYMAGRCSLGWSEAQPLVSKQSLNRKLLPVEALVTPTAQDVSETPFIGDDKIGVLLLNLGGPETLEDVQPFLFNLFADPAEELRKSLWEKNVPANVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLANMQHTVIPSWYQREGYVTAMANLIEKELKGFDSPKEVMIFFSAHGVPLAYVEDAGDPYKAEMEECVDLIMEELEKRKINNAYTLAYQSRVGPVEWLKPYTDDTIVELGKTGLLPSVFTPTPRPTERISDTAILFYCCLIHSFVSEHIETLEEIDVEYKELALKSGIENWGRVPALGCEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRKELPPPIMVWEWGWTKSAETWNGRAAMLAVLLLVFFEVSTGQGFLHQWGIFPLIR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0979 499 SUPERFAMILY Chlorophyll a-b binding protein 454 494 - -
Lal19g0979 499 Gene3D - 111 144 - -
Lal19g0979 499 SUPERFAMILY Chelatase 113 416 - -
Lal19g0979 499 PANTHER FERROCHELATASE 63 142 IPR001015 GO:0004325|GO:0006783
Lal19g0979 499 PANTHER FERROCHELATASE 143 420 IPR001015 GO:0004325|GO:0006783
Lal19g0979 499 TIGRFAM hemH: ferrochelatase 144 410 IPR001015 GO:0004325|GO:0006783
Lal19g0979 499 ProSitePatterns Ferrochelatase signature. 256 277 IPR019772 GO:0004325|GO:0006783
Lal19g0979 499 Gene3D Chlorophyll a/b binding protein domain 379 495 - -
Lal19g0979 499 CDD Ferrochelatase_C 236 393 IPR033644 -
Lal19g0979 499 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 63 142 - -
Lal19g0979 499 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 143 420 - -
Lal19g0979 499 Gene3D - 229 378 - -
Lal19g0979 499 Pfam Ferrochelatase 143 332 IPR001015 GO:0004325|GO:0006783
Lal19g0979 499 Pfam Ferrochelatase 357 409 IPR001015 GO:0004325|GO:0006783
Lal19g0979 499 Pfam Ferrochelatase 114 142 IPR001015 GO:0004325|GO:0006783
Lal19g0979 499 CDD Ferrochelatase_N 115 229 IPR033659 -
Lal19g0979 499 Hamap Coproporphyrin III ferrochelatase [cpfC]. 113 410 IPR001015 GO:0004325|GO:0006783
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0979 Lal-Chr19 13709504 13716495 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0979 K01772 - gmx:100803481 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0979 19 13709504 13716495 Lal19g0979 19 13709504 13716495 ECH
Lal14g1407 14 15355480 15361904 Lal19g0979 19 13709504 13716495 LSH
Lal19g0979 19 13709504 13716495 Lal21g0778 21 6582973 6585415 PCT
Lal21g0778 21 6582973 6585415 Lal19g0979 19 13709504 13716495 PCT