Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0977 ATGCCTCTTTTAAGGAGAAAGCCATCTACTTTGGCCGAGCCACCGAAGGATTTGAAGCCAGATGAGCTTGTTTACCAAATTCGATTTACAAAAGAAATATTTCGTGATTATCATGAATACTTGAACTTTTTAAATCTATATCGGCAGAGGATTTGGATGTGTAAAGTCTCTGGAAAAACTGGCTTGACTTATGAAGAGGCTTTGGTGTCAGAACAATGTGGCACTGAGAAAGTTCAACAGTTTCCTAAAGAATTGACTGCACCTGCTCTACAGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTCGCTGATTCTATTAATGAAAAATTGCTGGGACATTTGTTTGTGGGTGTGGAATTGTTTGTGAAAAAGGATGATGGAGTGTATCCATGCAAAATATTGAAAGTCATCCCGGAGGGAGTTGACAAATGCCTTTATGAGGTAGCTTGGCTCAAGAAGGACAGGAATATAACTGAAACAGCAGATGTCTGTGCAGAAGATTTGGTGCAAAAGAAGCCTCTTTTTAGTAGAAATTTTTTGAAGTCTTTTATCCGAGAATCCACATACCGGAATGCCCCTTGGGTTTTACATGAAGAACTGGCACAAAAACATGGAATCTCAACTGACGTTCCTGAGGTGTTACGAGGAAGGGTTTTCTTCAAAAACGGAATTTTAACCTGCTCTAAGAAAAGAAAAAATGAGGAATCAATGGAGGAAACTGAAACCAGCAACAAAAGGAAGAATGTGGATTGTTCTGCCCGAAAGGAAGGAAATGGCCAACACATAGAGGAGCCAATCAAATATCCAATTGATGATCTATTGGTGAAGCCTGGCCCAGATGATCCTGTTTTCACTACTCATCCTTCTCCTTCGAGAGACTTTAATATTCCAATGGATTGTGTAGGAGATCTCTTAAGGATTTGGGATTTTTGTACTTCTTTTGCCAAACTGTTGCGTCTGTGGCCCTACTCTTTAGAAGATTTTGAAAATGCAATAGGCCATAGGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTCTTTCGTGTGCTCATCAATGATGATGGAGAATACTCTACAGCCATAAAGAAACGAAGATCGAAGTATAAGATTACAATGATTAATTGGTCAGAGTATTTATCCGATTTTCTAGAGATGATCAATATTCCTGGACTACGCCAATATGAAGCTACCATTAAACGGGGACATTATGGCCTTGTAGATGTCAATGTTAAATTAGAAATCTTATCGGAATTGGTCAATCAAGTCCTTGAAACAGGAATTTTCAGGGAAAAAATGGATGAGCTTATTGAAGAGCGACAGGTACTTGGGGCCTCTAGAAGGGAAGAGGCACTGGAAGATGCTAGGAAGAGAAGAAAAGAAAAGGAGCAGTTGAAAGCTGGGCCAGAAAGCAATGGCGTTGTGGATGGGCATCATCTGAATGATGCAAATGTCTCAACAAACAATAATCATGGCAATGGAGATGTGGGAGAGAAAACAAATGGAGAAATCAAACCATCTAGGAATGATACACCGGGTAGAAGTGGGATCAAACATTCAAATCCTGCTTCAAAAAAGACACAGAAGAAGCTGACTTCAGAGGTGGAAGAACCAACAGAACATGGAAAAGTTGTATCCAGTAAGAGATTACAGAAACAATTAAAGGGTGATAAGGTTCCATCAGAGAAGAATTGTAGAGAACAAAGGAAGAAGCTGAATTCAGAGCTGAAGGAAACAACAGAAAATGGAAAAGAATTATCCAGAAAGAAACTACCGAAACAATTGAATGGTGATACAGATCCATCAGAGAAGAATAGTGTAGAAAAGAGGAGAGAATATTTTGATCGGGAGATGGACAAACGGTTAATTAGAAGAAGCCCTTTAGGTAAGGACAGATATTATAATAGGTATTGGTGGTTCCCCCGTGATGGGAGGCTATTTGTTGAAAGTTCTGATTCCAGGGAGTGGGGATACTACAGCAGCAAGGAAGAGGTTGATGCACTGATGGGTTCACTAAATTGCAAGGGTGAGCGGGAAAGGGCGCTACAAAAGCAATTGGGAAAATATTATAAACGCATATGCTCGGAACTCCAGAAAAGATCGAAGGATTTGATGCAAAAGAATGAAGTGGATGAGTCTGTGGTTCGAAGGTCTACTCGAATTCGAGCTCCACCTCGGCAAAACCCTGCTAATGCTTTCCTCAGATATGTTAACAAGTGGAAGGAAGAGTAG 2241 0.4034 MPLLRRKPSTLAEPPKDLKPDELVYQIRFTKEIFRDYHEYLNFLNLYRQRIWMCKVSGKTGLTYEEALVSEQCGTEKVQQFPKELTAPALQIIQYSMLPLKDLADSINEKLLGHLFVGVELFVKKDDGVYPCKILKVIPEGVDKCLYEVAWLKKDRNITETADVCAEDLVQKKPLFSRNFLKSFIRESTYRNAPWVLHEELAQKHGISTDVPEVLRGRVFFKNGILTCSKKRKNEESMEETETSNKRKNVDCSARKEGNGQHIEEPIKYPIDDLLVKPGPDDPVFTTHPSPSRDFNIPMDCVGDLLRIWDFCTSFAKLLRLWPYSLEDFENAIGHRDSNVVLLVESHAALFRVLINDDGEYSTAIKKRRSKYKITMINWSEYLSDFLEMINIPGLRQYEATIKRGHYGLVDVNVKLEILSELVNQVLETGIFREKMDELIEERQVLGASRREEALEDARKRRKEKEQLKAGPESNGVVDGHHLNDANVSTNNNHGNGDVGEKTNGEIKPSRNDTPGRSGIKHSNPASKKTQKKLTSEVEEPTEHGKVVSSKRLQKQLKGDKVPSEKNCREQRKKLNSELKETTENGKELSRKKLPKQLNGDTDPSEKNSVEKRREYFDREMDKRLIRRSPLGKDRYYNRYWWFPRDGRLFVESSDSREWGYYSSKEEVDALMGSLNCKGERERALQKQLGKYYKRICSELQKRSKDLMQKNEVDESVVRRSTRIRAPPRQNPANAFLRYVNKWKEE 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0977 746 MobiDBLite consensus disorder prediction 232 257 - -
Lal19g0977 746 Pfam DDT domain 300 357 IPR018501 -
Lal19g0977 746 MobiDBLite consensus disorder prediction 484 499 - -
Lal19g0977 746 MobiDBLite consensus disorder prediction 516 531 - -
Lal19g0977 746 MobiDBLite consensus disorder prediction 450 614 - -
Lal19g0977 746 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 119 IPR013136 -
Lal19g0977 746 SMART testlast3 299 360 IPR018501 -
Lal19g0977 746 MobiDBLite consensus disorder prediction 532 614 - -
Lal19g0977 746 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 744 - -
Lal19g0977 746 Coils Coil 565 592 - -
Lal19g0977 746 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 626 692 IPR028941 -
Lal19g0977 746 ProSiteProfiles DDT domain profile. 299 360 IPR018501 -
Lal19g0977 746 Coils Coil 448 468 - -
Lal19g0977 746 MobiDBLite consensus disorder prediction 450 470 - -
Lal19g0977 746 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0977 Lal-Chr19 13693880 13701777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0977 598 716 Homeobox Transcription Factor Family AT1G28420 32.609 1.28e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lal19g0977 WAC_Acf1_DNA_bd 5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0977 - - var:108323886 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0977 19 13693880 13701777 Lal19g0977 19 13693880 13701777 ECH
Lal7g0842 7 15029974 15037115 Lal19g0977 19 13693880 13701777 LSH