Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0966 ATGAAGGAAACGGATCAAATGGGAAAAGAAAATGTGTCGGAAATGGTAAAGGAAAAAGTTATCAATGATAGTACGTCAAGTGTTGAAGCTGGGGATTTAGAATCTCAGTCTCGCCTTAGCCTGGAGAGGGAGGCAGGCTTGCCAACCTGTCGTGTGTGCCAATGTGTTGAATCTGATAAAAGGGGAGATGCTGTGCTAGAATTGTTGGGCATCGCTCCGGTTATAGAAGTGTGTAAAAGCAATGAGGAACTAAAGTCTGATGGTGATGAAATTCCAAAGCAAATCCCTCTTGACAGAAATGTTGAAAACAATTTGGGGGTGGTGGATCTTGTTAACCCTGGTGGTGAGGTTTTAATTTGTAAAAGTGATTTGGAAATTGGGTTGTCTCCTCAAGATACATTAATTGAACTCGGTTGTTGTTGTAAAAATGACCTTGCTTTAGTCCACTATGCTTGTGCACTCAAATGGTTTGTCAGCCATGGTTCTACCATTTGTGAAATATGTGGACATATAGCAAAAAATATCAGAATTTCTGACTTCAATGAGGTTATTAGTTATTTAAAAGAGTATGAATCATTGAGGGAAGGAACTGCCAATGGTAATCCTGGTCCTGCACAAGTTCATTCTAATACTGGTGTGGATCCTGATGCTGTGGCTTCTATGCGTAGGCAGTGGCTAAGTGAGATTGCACTATGGTTTTGTCCTCATAATAACAGTAACAATAATAACCATAGCATCATGGAAACATTTTCGCAGGCTATTTCTGAGCAGCCTTCAAATATCATAATTGAAGAGGCTGGCCCTGCAACACATCCTGCATTGAAATGGGTTGCGGAAGGTACAGGGATCCTGCTTGCTACTGGGCTGCTTACTATCACCCTTGCATGGTTTATAGCTCCTCGTGTTGGAGAGAAAACTACAAAAAGTGGCCTTCATATCCTATTTGGTTGCGTCTGTGCTTTAACAGTGGTGATTTTCTTCCGCTTTTTTGTGCTCACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGTCTTCTAGGGCAAATGGTACAACAGACACAACATGA 1107 0.4128 MKETDQMGKENVSEMVKEKVINDSTSSVEAGDLESQSRLSLEREAGLPTCRVCQCVESDKRGDAVLELLGIAPVIEVCKSNEELKSDGDEIPKQIPLDRNVENNLGVVDLVNPGGEVLICKSDLEIGLSPQDTLIELGCCCKNDLALVHYACALKWFVSHGSTICEICGHIAKNIRISDFNEVISYLKEYESLREGTANGNPGPAQVHSNTGVDPDAVASMRRQWLSEIALWFCPHNNSNNNNHSIMETFSQAISEQPSNIIIEEAGPATHPALKWVAEGTGILLATGLLTITLAWFIAPRVGEKTTKSGLHILFGCVCALTVVIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWSSRANGTTDTT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0966 368 ProSiteProfiles Zinc finger RING-CH-type profile. 109 175 IPR011016 GO:0008270
Lal19g0966 368 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 17 364 - -
Lal19g0966 368 MobiDBLite consensus disorder prediction 18 34 - -
Lal19g0966 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 179 IPR013083 -
Lal19g0966 368 PANTHER ZINC FINGER, RING-CH-TYPE 17 364 - -
Lal19g0966 368 Pfam RING-variant domain 134 168 IPR011016 GO:0008270
Lal19g0966 368 MobiDBLite consensus disorder prediction 1 38 - -
Lal19g0966 368 MobiDBLite consensus disorder prediction 1 17 - -
Lal19g0966 368 SMART ringv_2 119 169 IPR011016 GO:0008270
Lal19g0966 368 SUPERFAMILY RING/U-box 132 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0966 Lal-Chr19 13603504 13609009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0966 7 357 C3H Transcription Factor Family AT5G08750 56.667 4.60e-133 383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0966 19 13603504 13609009 Lal19g0966 19 13603504 13609009 ECH
Lal14g1395 14 15248947 15255105 Lal19g0966 19 13603504 13609009 LSH