Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0958 ATGGGGAGCAAGAGCGGTAACAAAGCACTGAGCCTCAACGATAGTCACTATCGCTACCTTCAACGTCTTCCTACAAATCCCTCTCTCCCAAACCCTAACCCTAACCCTCACTCTTCTGCATCTGCAATGAAAAACGACGAAACTTTTCCTCATTTCTCTGCAATCACCGACTTCGATTCTCCTTCTCCGATCGCTAAAAACTCATCGGAGAAACACGAACCAGTCACGATTCGACTCGAAGAAGAAGAACACGATCTTCCTAATATAGAAAATGTCGCTCCATTGCTCTCCGATTCTTCCCCTAGGGAAGAAAACAAGGTGAAGACAAAGGTGAAAATGGAAGGGCGACGACGTCTCTGTAAGGTTGCTTATTCGGAGGAAGTTGATGATGGTGCTTGTAAGAAGGTGGCAGTTGATGAATCCAACGCTGATCACGTCATCAGTCTGGATACGCCTGTTAAGGTAAAGGAGAGTAATGGTGGGAGTGAAATTAGGGATATTTTGAATGATTTGAGCTCCAAGTTTGAGTTGCTCTCTGTTGAGAGGACTCGAGTCAAACAAAAAGAACCTTGTGTAGATGAGGTAGTGGAGTATAGGAGTGCAGATTCTTCTTTTTCTCCCGAACAGGATCTCCATAAGGGTACTACTAACAATGCTAAGGGTGCTACCAGTCCTCCTGCTGCTATTGATTATGTGGATGATGATGACTCTGATGATTGTGTTCAAGAGTTGGATCATTTCGAGCCACAAAATGATGGTTCCATAAAATTAGCAGATCCGAAGTTTACATTCAACTTGCCTAGTAAAATTGGAAAAATGTTGTATCCCCATCAGCGGGAAGGGTTGAAATGGCTCTGGTCTTTGCATTGTTTGGGAAAAGGTGGAATATTGGGTGATGATATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTTTCTTGCTGGTCTGTTTCATTCCCGTCTAATTAGGAGGGCAATGGTGGTGGCTCCCAAAACTTTGTTGCCCCATTGGATTAAAGAATTATCGGTTGTTGGTCTCTCTGACAGGATAAGAGAATACTATGGAACTTCTGTGAAAGCCAGAGAATACGAACTTAAGTCCATACTTCAGGATAATGGTGTTCTTCTTACGACCTATGACATTGTCCGCAACAACACTAAATCTCTAAAGGGGAATAATTATTTTGATGAGGATGATAGTGAAGATGATCCAACTTGGGATTATATGATACTTGATGAGGGACATCTTATAAAGAATCCGAGCACACAAAGAGCTAAAAGTTTACTTGAAATACCTAGTGCCCATCGCATTATTATCAGTGGCACACCACTGCAAAATAATCTTAAGGAGTTATGGGCCTTGTTTAATTTTTGCTGCCCTGAATTACTTGGTGACAATAAATGGTTCAAAGCCCAATTTGAAGTGCCCATACTTCGTGGAAATGATAAAAATGCATCTGACAGAGAGCAACGTATTGGTTCAGCTGTAGCGAAGGAGCTAAGAGATCGTATTCAGCCATACTTCTTAAGACGTCTAAAGAGCGAGGTTTTCAATCAAGATGATGAGAAAACAACAGCAAAGCTTTCTCAGAAACAAGAGATTATTGTGTGGCTTCGGTTGACCAATGTTCAGCGACATCTTTATGAAGCATTTCTGAGGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCATTGGCCGCCCTTACGATTTTGAAAAAAATATGTGATCATCCACTTTTGTTGACAAAGCGGGCGGCTGAGGATGTGTTGGAAGGGTTGGACTCAATGCTAAAGCCAGAAGAGGTTAATATTGCAGAAAATTTAGCGATGCATATCGCAGATGTTGCTGACACAGATAAATTTAAAGATGAGAATGATGTGTCGTGCAAAATTTTGTTTATTATGGCATTATTGGATAATTTGATCCCAGAAGGACATAATGTGCTAATCTTTTCTCAGACTCGCAAAATGCTTAATCTTATTCAGGAATGTCTAATATCTAAAGGTTATGACTTTCTACGAATTGATGGTACAACAAAACCAAGTGACAGACTGAGGGTTGTTAATGATTTCCAAGAAGGTCATGGAGCTCCTATATTTCTTTTGACATCTCAAGTTGGTGGCTTAGGACTGACACTCACAAGAGCAGATCGTGTAATTGTAGTGGATCCTGCTTGGAATCCAAGTACGGATAATCAAAGTGTTGACCGTGCATATCGCATTGGTCAAACGAAAGATGTTCTTGTGTATAGACTGATGACATGCGGAACTGTTGAGGAAAAGATTTACCGAAAGCAGGTATATAAAGGAGGACTATTCAAATCTGCTACTGAACATAAAGAACAAATCAGATACTTTAGCCAACAGGATCTTAGGGAGCTTTTCAGAATCCCAAAAGAGGGATTTGATGTATCTGTTACCCAACAACAATTGGATGAAGAGCATGATCGTCAACACACAGTGGATGATTCTCTCAAGGCACATATACAATTCTTGAAAAGCCTAGGCATAGCTGGAGTTAGTCATCATAGTCTACTCTTTTCCAAGACTGCACCAGTTCAAGCTGCTCTTGAGGATGATGAAGTGGCAAGGATTCGGGGGACTAAATATGTTGGAACTTCAGTGTCTTCTTCTTCTTCTTCGCGTGAACATATTTCTGATGGAGCTGAATTTGCATTTAATCCGAAGGATGTGAAGTTGAGCAGAAAAGGCTCATCCCCTAGTAATTCTGGTGAACTGCCCAAGTCAGAAATTAAGGGTAAAATTAACCGGCTCTATCAAACACTCTCAAATACGGCAATGATTTCTAAGTTGCCTGATAAGGGAGAGAAACTACGAAAACGGATTGCAGAGCTGAATATAGAACTCGCTGACCTGAACAAGGAAGAAAATAGTGTAATTGATTTGGATGATTTTAGTAGTGAATTTGAAAGAGTGTTGAATGTATAG 2952 0.4092 MGSKSGNKALSLNDSHYRYLQRLPTNPSLPNPNPNPHSSASAMKNDETFPHFSAITDFDSPSPIAKNSSEKHEPVTIRLEEEEHDLPNIENVAPLLSDSSPREENKVKTKVKMEGRRRLCKVAYSEEVDDGACKKVAVDESNADHVISLDTPVKVKESNGGSEIRDILNDLSSKFELLSVERTRVKQKEPCVDEVVEYRSADSSFSPEQDLHKGTTNNAKGATSPPAAIDYVDDDDSDDCVQELDHFEPQNDGSIKLADPKFTFNLPSKIGKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRAMVVAPKTLLPHWIKELSVVGLSDRIREYYGTSVKAREYELKSILQDNGVLLTTYDIVRNNTKSLKGNNYFDEDDSEDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKAQFEVPILRGNDKNASDREQRIGSAVAKELRDRIQPYFLRRLKSEVFNQDDEKTTAKLSQKQEIIVWLRLTNVQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPEEVNIAENLAMHIADVADTDKFKDENDVSCKILFIMALLDNLIPEGHNVLIFSQTRKMLNLIQECLISKGYDFLRIDGTTKPSDRLRVVNDFQEGHGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKSATEHKEQIRYFSQQDLRELFRIPKEGFDVSVTQQQLDEEHDRQHTVDDSLKAHIQFLKSLGIAGVSHHSLLFSKTAPVQAALEDDEVARIRGTKYVGTSVSSSSSSREHISDGAEFAFNPKDVKLSRKGSSPSNSGELPKSEIKGKINRLYQTLSNTAMISKLPDKGEKLRKRIAELNIELADLNKEENSVIDLDDFSSEFERVLNV 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0958 983 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 461 IPR014001 -
Lal19g0958 983 MobiDBLite consensus disorder prediction 898 918 - -
Lal19g0958 983 MobiDBLite consensus disorder prediction 203 227 - -
Lal19g0958 983 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 634 793 IPR001650 -
Lal19g0958 983 PANTHER OS04G0692700 PROTEIN 263 864 - -
Lal19g0958 983 CDD SF2_C_SNF 623 754 - -
Lal19g0958 983 Gene3D - 251 533 IPR038718 -
Lal19g0958 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 511 IPR027417 -
Lal19g0958 983 MobiDBLite consensus disorder prediction 1 105 - -
Lal19g0958 983 SMART helicmild6 660 743 IPR001650 -
Lal19g0958 983 MobiDBLite consensus disorder prediction 1 26 - -
Lal19g0958 983 Coils Coil 943 970 - -
Lal19g0958 983 Pfam Helicase conserved C-terminal domain 631 743 IPR001650 -
Lal19g0958 983 PANTHER SNF2/RAD54 FAMILY MEMBER 263 864 - -
Lal19g0958 983 SMART ultradead3 269 472 IPR014001 -
Lal19g0958 983 Gene3D - 534 832 IPR027417 -
Lal19g0958 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 527 813 IPR027417 -
Lal19g0958 983 MobiDBLite consensus disorder prediction 71 88 - -
Lal19g0958 983 MobiDBLite consensus disorder prediction 203 223 - -
Lal19g0958 983 Pfam SNF2-related domain 277 581 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0958 Lal-Chr19 13553230 13560376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0958 629 796 RAD5 or RAD16-like Gene Family AT5G22750 35.119 1.20e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal19g0958 SNF2_N 4e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0958 K20093 - gmx:100779283 1357.04