Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0953 ATGCCAAATGATTTCACCACTGGAAGCCCTAAGAGTTCATGCTTAAAAACAAACAACAACCATATTAGCAATAAAGAACAAGATCGCTTTCTCCCTATAGCAAATGTTGGTAGAATCATGAAAAAAGTAGTTCCTGCCAATGGGAAAATCTCAAAGGATGCAAAAGAAACAGTTCAAGAATGCGTATCAGAGTTTATCAGTTTTGTAACAGGTGAAGCATCTGATAAATGTCAAAGAGAAAAGAGGAAAACGATCAATGGCGATGATATTATATGGTCCATCACAACCTTAGGTTTTGATGATTATGTGGAACCATTAAAAAACTATCTTCAAAAATATAGAGAGATAGAAGGAGAGAAACTTAATGTTCCAAAGCAACAACGTCCTGAACAAAGGGTACAACAACATCAATATCATAACCAAGATGAAAATAATCAATCACTAAGTAGTATATATTCCTCAGCAAGTCTCATTTCTCAATATCCCTATGTGGCCACAGATCAATCACTTTCACTACCATTCTCACCAAATTCGATTCAGAAACAGTTACAGCCACAAGACCAGATTGATTCATTGGGGAATTGGTATGAATAA 594 0.3535 MPNDFTTGSPKSSCLKTNNNHISNKEQDRFLPIANVGRIMKKVVPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWSITTLGFDDYVEPLKNYLQKYREIEGEKLNVPKQQRPEQRVQQHQYHNQDENNQSLSSIYSSASLISQYPYVATDQSLSLPFSPNSIQKQLQPQDQIDSLGNWYE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0953 197 MobiDBLite consensus disorder prediction 127 146 - -
Lal19g0953 197 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 16 186 - -
Lal19g0953 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 186 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal19g0953 197 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Lal19g0953 197 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Lal19g0953 197 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Lal19g0953 197 MobiDBLite consensus disorder prediction 120 146 - -
Lal19g0953 197 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal19g0953 197 Gene3D Histone, subunit A 18 151 IPR009072 GO:0046982
Lal19g0953 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 93 IPR003958 -
Lal19g0953 197 SUPERFAMILY Histone-fold 27 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0953 Lal-Chr19 13511705 13512298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0953 8 195 CCAAT-HAP3 Transcription Factor Family AT2G13570 62.069 1.40e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal19g0953 CBFD_NFYB_HMF 1.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0953 K08065 - gmx:100778216 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0829 7 14937549 14938178 Lal19g0953 19 13511705 13512298 LSH