Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0950 ATGAAGATACAAGGTTGTGAGGTTGAGGCCATAGGTATCAACTACAAGATCCACACACAGAAAACAAAGCACCCTTTTAAAATCTTCAGGAAATCACAACTAGAAACCAAAGAAGATGGTCAAGAACCAGAAGCTGAAAAAAGTTGTAGTGGAGTTAAGTGTGTCCTCAAGAATGTGAGTTGCAGAGCCAAGCCATGGGAAATCCTAGCAATTGTTGGGCCAAGTGGAGCTGGAAAGTCATCACTGCTTGAGGTTCTTGCTGGTAAAGTTAGTCCACAAAGTGGTACTGTTTTTGTGAACCAGAAGCCTGTGAAAAAAGCTCAGTTCAAGAAGCTTTCAGGGTATGTTACACAAAAGGATACTTTGTTTCCTTTACTTACAGTTCAAGAAACCATGATGTTTAGTGCAAAACTAAAGCTAAAGCTTCCACAAGAACAACTATGCTCTAGGGTCAAGTCACTGATTAAGGAGCTTGGACTTGACCATGTTGCTGGGACTAGAATCGGCGATGACAGGATCAGAGGGATATCCGGTGGAGAGAAGCGCAGAGTCTCTATTGGTGTTGAAGTCATACATGACCCAAGAGTGTTGATTCTGGATGAACCAACTTCGGGGCTAGACAGTAACTCAGCTTTGCAGATAGTTGATATGCTTAAGGAAATGGCTGACACTAAGGGCAGAACTATAATCCTTAGTATCCATCAACCTGGGTTCAGAATAGTGAAGTTGTTCAATTCATTTCTGATGTTAGCCAATGGCTGTGTTTTACACCATGGCACTGCGGATTTGCTCGGTGTGAATCTAAGGCTCATGGGTTTAGAGCTTCCTCTTCATGTTAATGTTGTCGAATTTGCCATTGAGACAATTGATGTCATTCAGCAACAAGAAAAGTGTCAGCTAGAAATTCCAAGGCAATTGCAAGGGAAAATGCAACTGAAGAAAGGCGAGGATGCAGAAGAACAAGGTAAGTGTAGAAGTGGTAAGTTTACTCTACAACAGCTCTTTCAACAGTCCAAAGTGATTGATGAAGAAATCATCAATGCTGGGATAGACTACCCTTGTGATTATGCTAATTCTAGATTAAGAGAAACTATGATTCTCACTCAAAGGTTCTCTAAGAATATTTTTCGTACAAAAGAGCTTTTTGCATGTAGGACACTTCAGATGCTCGTTTCTGGGCTTGTTCTAGGATCCATCTTTTGTAACCTCAAGGATGATCTAGTAGGAGCAAGAGAAAGGGTTGGTCTATTTGCTTTCATATTAACCTTTTTGTTATCAACCAGCGTAGAAGCTTTACCAATCTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAGACATCTTCTGGAAGCTACCGTGTATCGTCCTACGCCATCGCCAATGGTCTAATTTACTTGCCATTTCAACTCATGCTAGCCATTTTGTTCTCATTGCCCTTATACTGGCTTGTTGGTCTCAACAGGAATTTCATGGCGTTTGTGCAGTTTCTGTTGCTGATATGGCTGATTCTTTATACAGCCAATTCAGTTGTGGTGTGTTTCAGTGCTTTAGTGTCTAATTTCATAATAGGGAATTCAGTGATTGCTGGTGTCATTGGATCATTCTTCTTATTCTCTGGATACTTCATATCAAATCATGAAATTCCTAACTACTGGATTTTCATGCATTATATATCTCTGTTCAAGTATCCCTTTGAAGGGTTCCTGGTAAATGAATTCTCCAACTCAGAGAAGTGCTTGCAGTACGTGTTTGGGAAATGCAAGCTGAGAGGAGAGGGTATGCTTAAAGAAGAAGGGTATGGAGGAGAGAGCAGTAGATGGAAGAATGTGGGGATCATGGTGTCCTTCATCTTGTTTTACAGGTTTATTTCTTATCTTATTCTTAGATATAGATGCTCATAG 1899 0.4055 MKIQGCEVEAIGINYKIHTQKTKHPFKIFRKSQLETKEDGQEPEAEKSCSGVKCVLKNVSCRAKPWEILAIVGPSGAGKSSLLEVLAGKVSPQSGTVFVNQKPVKKAQFKKLSGYVTQKDTLFPLLTVQETMMFSAKLKLKLPQEQLCSRVKSLIKELGLDHVAGTRIGDDRIRGISGGEKRRVSIGVEVIHDPRVLILDEPTSGLDSNSALQIVDMLKEMADTKGRTIILSIHQPGFRIVKLFNSFLMLANGCVLHHGTADLLGVNLRLMGLELPLHVNVVEFAIETIDVIQQQEKCQLEIPRQLQGKMQLKKGEDAEEQGKCRSGKFTLQQLFQQSKVIDEEIINAGIDYPCDYANSRLRETMILTQRFSKNIFRTKELFACRTLQMLVSGLVLGSIFCNLKDDLVGARERVGLFAFILTFLLSTSVEALPIFLQEREILMKETSSGSYRVSSYAIANGLIYLPFQLMLAILFSLPLYWLVGLNRNFMAFVQFLLLIWLILYTANSVVVCFSALVSNFIIGNSVIAGVIGSFFLFSGYFISNHEIPNYWIFMHYISLFKYPFEGFLVNEFSNSEKCLQYVFGKCKLRGEGMLKEEGYGGESSRWKNVGIMVSFILFYRFISYLILRYRCS 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0950 632 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524
Lal19g0950 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 277 IPR003439 GO:0005524
Lal19g0950 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 627 - -
Lal19g0950 632 Pfam ABC-2 type transporter 364 572 IPR013525 GO:0016020|GO:0140359
Lal19g0950 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 262 IPR027417 -
Lal19g0950 632 CDD ABCG_EPDR 46 259 - -
Lal19g0950 632 SMART AAA_5 65 262 IPR003593 -
Lal19g0950 632 Pfam ABC transporter 56 204 IPR003439 GO:0005524
Lal19g0950 632 Gene3D - 43 310 IPR027417 -
Lal19g0950 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 1 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0950 Lal-Chr19 13486102 13488000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0950 55 282 Calmodulin-binding Proteins AT2G36910 25.523 1.21e-15 79.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1380 14 15168760 15170691 Lal19g0950 19 13486102 13488000 LSH
Lal7g0824 7 14917195 14917932 Lal19g0950 19 13486102 13488000 LSH