Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0941 ATGTCTTCTTCTTTCTTCTTCCTCTCATTTCTCTTCTTACTCACCCTCTCTTCCGCCGCCAAACCACCACCCTCCCTCACCACCACCGCCACCCCGGTAATCCAACAAGCTTGTAAAGCCACAAACTTCTCCCAACAATGTGAATCCACTCTCTCCCAAGCCAAGCTCCCACCAAACCCAACCTCCCTCGAACTCATCCAAGCCGCCATGGCTGCCTCCTCCTCCAACCTCGACACTGCCCTAACCAAGATCCAGTCCCTCCTCGACGCCTCCACCGATAGCAAAAACCGCTCCGTCGCCGCCACCATCTGCCTAGAGGTTCTCCAAAACTCCAACTACCGCATTTCTCTCGCCAACGCTTCCCTTCCAAGTGGCAAGATCAAAGACGCACGCGCCTGGCTCAGCGCCGCACTCGCCTACACCTACGATTGCTCGAACGTCCTCAAGTACGTCAACGATACAAAGCAGGTCGCTGAAACGATGTCGTTTGTAAACTCCATATACAATCTGAACAGCAACGCGCTCAGCTTGTCGTTTAACTACGACGCGTTCGGTAACGACATCGCGTCGTGGAAACTACCGAAGACAGAGCGTGATGGGTTCTGGGAAAAACTCGAATCAGGTGGCGAGTCAAAAGCTATTACCGGAATACCGGATAAGTCGGTAGCAGATGTTACAGTTTGTAAGGGAGGGGATAGTGGGTGTTTGAAGACGATTCAGGAAGCGGTGAATAAGGCACCGGATAACGACGGTAAGGGAAAGAAGTTTGTGATATATATAAAGGAAGGGGTTTATGAAGAAACCGTTAAGGTTCCGTTGGAGAAAAGGAATGTTGTATTCTTAGGTGATGGAATGGGGAAGACGGTCATTACTGGTTCTGCGAATGCGGGTCAACTTGGGGTCTCCACCTACACCTCAGCCACAGTCGCTATTGTTGGCGATGGATTCATGGCAAAGGACCTAACATTCCAAAACACAGCACCTTCTCATCAAGCAGTGGCATTCAAATCAGACAGTGATCTTTCTATCATTGAGAATTGTGAATTCTTAGGAAACCAAGACACCCTTTTACCTCAATCCTTGCGCCAATTTTACAAATCATGCTATATCCAAGGCAACATAGACTACATCTTTGGCAATTCTGCTTCAGTTTTCCAAGACTGTAAAATCTTAGTTCGTCCAAGACAAGATGAGAACCCTGAGAAGGGTGCGTCCAATACAATCACAGCACATGGTAGAACAGACCCTGCACAAGCAACAGGTTTTGTTTTCCACAACTGTTTGATCAATGGAACTGAGGAATATTTGGCATTATATCATAGCAACCCTAATGTACACAAGAGTTTCTTGGGTAGGCCATGGAAGTTGTATTCTAGAACAGTTTTCATTAACTGTCAGTTAGATGAGATTGTTACACCAAAGGGTTGGTCGCCATGGACAGAGGCTCCACTGAAAACACTTTACTATGGTGAGTTTGGGAATTCAGGACCTGGTTCTGATTTGTCTCAGAGGGTGCCATGGAGTAGCAAAATTCCTTCTGAGCATGTGTTGGAATATTCAGCACAGAATTTCATTCAAGGAAATACTTGGATTCCATCATCTCTATTATCATCCAAGTTTGATAAGAGCAATTAA 1635 0.4667 MSSSFFFLSFLFLLTLSSAAKPPPSLTTTATPVIQQACKATNFSQQCESTLSQAKLPPNPTSLELIQAAMAASSSNLDTALTKIQSLLDASTDSKNRSVAATICLEVLQNSNYRISLANASLPSGKIKDARAWLSAALAYTYDCSNVLKYVNDTKQVAETMSFVNSIYNLNSNALSLSFNYDAFGNDIASWKLPKTERDGFWEKLESGGESKAITGIPDKSVADVTVCKGGDSGCLKTIQEAVNKAPDNDGKGKKFVIYIKEGVYEETVKVPLEKRNVVFLGDGMGKTVITGSANAGQLGVSTYTSATVAIVGDGFMAKDLTFQNTAPSHQAVAFKSDSDLSIIENCEFLGNQDTLLPQSLRQFYKSCYIQGNIDYIFGNSASVFQDCKILVRPRQDENPEKGASNTITAHGRTDPAQATGFVFHNCLINGTEEYLALYHSNPNVHKSFLGRPWKLYSRTVFINCQLDEIVTPKGWSPWTEAPLKTLYYGEFGNSGPGSDLSQRVPWSSKIPSEHVLEYSAQNFIQGNTWIPSSLLSSKFDKSN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0941 544 Gene3D - 221 540 IPR012334 -
Lal19g0941 544 SUPERFAMILY Pectin lyase-like 223 534 IPR011050 -
Lal19g0941 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 178 IPR035513 -
Lal19g0941 544 CDD PMEI-like_3 37 177 - -
Lal19g0941 544 Pfam Pectinesterase 224 528 IPR000070 GO:0030599|GO:0042545
Lal19g0941 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 180 IPR035513 -
Lal19g0941 544 SMART PMEI_2 29 177 IPR006501 GO:0004857
Lal19g0941 544 PANTHER PECTINESTERASE 19 534 - -
Lal19g0941 544 PANTHER PECTINESTERASE 19 534 - -
Lal19g0941 544 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 178 IPR006501 GO:0004857
Lal19g0941 544 Pfam Plant invertase/pectin methylesterase inhibitor 33 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0941 Lal-Chr19 13408876 13412687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0941 34 530 Carbohydrate Esterase AT5G09760 60.594 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0941 - - gmx:100819675 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1372 14 15109715 15113251 Lal19g0941 19 13408876 13412687 LSH
Lal19g0941 19 13408876 13412687 Lal17g0731 17 5182271 5186395 PCT
Lal17g0731 17 5182271 5186395 Lal19g0941 19 13408876 13412687 PCT