Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0940 ATGTCTTCTTCTTTCTTCTTCCTCTCATTTCTCTTCTTACTCACCCTCTCTTCCGCCGCCAAACCACCACCCTCCCTCACCACCACCGCCACCCCGGTAATCCAACAAGCTTGTAAAGCCACAAACTTCTCTCAACAATGCGAATCCACTCTCTCCCAAGCCAAGCTCCCACCCAACCCAACCTCCCTCCAACTCATCCAAGCCGCCATGGCTGCCTCCTCCTCCAACCTTGACACTGCCCTAACCAATATCAAGTCCCTCCTCGACGCCTCCGCCGGTAACAAAAACCGCACCATCGCTGCCACCATCTGCCTAGAGGTTCTCCATAACTCCAACTACCGCATTTCTCTCGCCAACGCTTCCCTTCCAAGTGGCAAAACCAAAGACGCACGCGCCTGGCTCAGCGCCGCACTCGCCTACACCTACGATTGCTCGAGCTCTCTTAAGCACGCAAACGACACAAACCAGGTCCGTGAAATCATGTCATTCGTAGACTCCATATCAACACTGAATAGCAACGCGCTCGGCTTGGTATTTAACTACGACGCGTTCGGGAACGATACCGCGTCGTGGAAACTGCCCAATACAGAGCGTGACGGGTTTTGGGAGAAACCCGGGTCAGGTGGCGGGTCAGGAGATATTACCGGAATACCTGATAAGTCGGTAGCAGATGTTACAGTTTGTAAGGGAGGGGATAGTGGGTGTTTGAAGACGATTCAGGAAGCGGTGAATAAGGCACCGGATAATGACGGTAAGGGAAAGAAGTTTGTGATATATATAAAGGAAGGGGTTTATGAAGAAACCGTTAAGGTTCCGTTGGAGAAAAGGAATGTTGTATTCTTAGGTGATGGAATGGGGAAGACGGTGATTACTGGTTCTGCGAATGTGGGTCAGCCTGGTGTCTCCACCTACACCTCAGCCACAGTAGCTGTTCTTGGCGATGGATTCATGGCAAAGGACCTTACAATCCAAAACACAGCAGGTCCTATTACTTACCAGGCAGTGGCATTCAAATCAGACAGTGACCTTTCTATCATTGAGAATTGTGAATTCTTAGGAAACCAAGATACCCTTTATGCTCATTCCCTACGCCAATTTTATAAATCATGCCATATCCAAGGCAATGTTGACTTCATCTTTGGTAATTCTGCTGCAGTTTTCCAAGACTGTGTAATCTTAGTTCGTCCAAGACAAGAGAACCCTGAGAAGGGTGAGAGCAATGCAATCACAGCACATGGTAGATCAGATCCTGCACAAGCAACAGGGTTTGTTTTCCACAACTGTTTGATCAATGGAACTGATAAATATTTAGCATTGTATCATAGCAACCCTAATGTGCACAAGAATTTCTTGGGTAGGCCATGGAGGTTGTACTCTAGAACAGTTTTCATTCATTCTACGATGGATGCCATTGTTGCACCACAGGGTTGGTTGCCATGGAAAGAAGACTTTGCATTGAAAACACTTTACTATGGTGAGTTTGAGAATTCAGGACCTGGTTCTGATTTGTCTCAGAGGGTGCCATGGAGTAACAAAGTTCCTTCTGAGCATGTGTTGGCATATTCAGCACAGAATTTCATTCAAGGAAATACTTGGATTCCACCATCTCTATTATCATCCAATGTTGATAAGAAAAATTAA 1641 0.468 MSSSFFFLSFLFLLTLSSAAKPPPSLTTTATPVIQQACKATNFSQQCESTLSQAKLPPNPTSLQLIQAAMAASSSNLDTALTNIKSLLDASAGNKNRTIAATICLEVLHNSNYRISLANASLPSGKTKDARAWLSAALAYTYDCSSSLKHANDTNQVREIMSFVDSISTLNSNALGLVFNYDAFGNDTASWKLPNTERDGFWEKPGSGGGSGDITGIPDKSVADVTVCKGGDSGCLKTIQEAVNKAPDNDGKGKKFVIYIKEGVYEETVKVPLEKRNVVFLGDGMGKTVITGSANVGQPGVSTYTSATVAVLGDGFMAKDLTIQNTAGPITYQAVAFKSDSDLSIIENCEFLGNQDTLYAHSLRQFYKSCHIQGNVDFIFGNSAAVFQDCVILVRPRQENPEKGESNAITAHGRSDPAQATGFVFHNCLINGTDKYLALYHSNPNVHKNFLGRPWRLYSRTVFIHSTMDAIVAPQGWLPWKEDFALKTLYYGEFENSGPGSDLSQRVPWSNKVPSEHVLAYSAQNFIQGNTWIPPSLLSSNVDKKN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0940 546 Gene3D - 221 542 IPR012334 -
Lal19g0940 546 Pfam Plant invertase/pectin methylesterase inhibitor 33 176 IPR006501 GO:0004857
Lal19g0940 546 PANTHER PECTINESTERASE 19 536 - -
Lal19g0940 546 SUPERFAMILY Pectin lyase-like 223 537 IPR011050 -
Lal19g0940 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 178 IPR035513 -
Lal19g0940 546 SMART PMEI_2 29 177 IPR006501 GO:0004857
Lal19g0940 546 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 177 IPR006501 GO:0004857
Lal19g0940 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 180 IPR035513 -
Lal19g0940 546 CDD PMEI-like_3 37 178 - -
Lal19g0940 546 PANTHER PECTINESTERASE 19 536 - -
Lal19g0940 546 Pfam Pectinesterase 224 530 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0940 Lal-Chr19 13401032 13404029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0940 34 532 Carbohydrate Esterase AT5G09760 62.500 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0940 - - gmx:100819675 751.51