Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0936 ATGCTGAGCTCTAATGAAGGAGATAATGATGTATTCTTTGACTCAATAGATAGTTTGTCACCTCAAGATTGTGGTTTAACCAAACAAGAGTTTAGTTCAGAATATGAAATTTGGGTGAATGAGCCTCTTAGTGTGAAAGAAAGGCGGGGACGGTTTCTTCAGGCTATGGGCTTATTTGAAACTTCTGCTTCCAAGATTAGTTCACAAGAGAAAATGGTTAACCTTGAAAGGATCAAGGAGTGTAGTGGAGCAGTATCGAATGCTTGCAATTTGGTTCTGTCTGGATGCAAAGCAGCTTCAGAAACAGAAGCCTTGTTTGATGGACTGAAAGGGAGGCCACAACTTAAACCAGATGTAAGTTTTGAAAGGAAAGTGCATGAGCTATCTTTTACAGGTCATGAGCACAGACATAGAGAAACTGAGGCACGCGAAGAATGTCGGGATTTTGAGATGGGTATAAAGAAGAAGAAGAAGAAATGGTGGTTCAAGAAAGTCGGTGAAGGGAAAGTCAGATCGAAATTGAATACCGGGACGAATAGAACTCATAGAGTAAAGGTAAGGCAGAATAAAAAGCGGTGGCTGGAGTTCAGTGGGCTATACATTGGACAACAGATCAGAGCACACCAGGGCTTAATCTGGACTATGAAATTTAGTCCCAATGGTCATTATTTAGCGAGTGGTGGCGACGATGGCGTTGTGCGCATATGGCATGTTATATCACTGGATACATCTAGTATTTGTTTCACCACAGAGGATAGTACTGCTAGCAAATTGAAGTTTGAGAACTCTTATCATCAGAAGAATCTTTCAAATCAATCCTTCATTTTCCTTCCAAATAAAGTTTTCCAAATTGAGGAGTCACCACTACAAGAATTTTATGGTCATTTCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTCTCCTCTTCTATGGATAGAACTGTTCGCTTGTGGAAAATTGGTTGCAATCAATGTCTAAGTGTTTTCCATCACAATGACTATGTGACATGCATTCAGTTCAACCCAGTTGATGAAAATTACTTCATCAGCGGGTCCATAGATGGCAAAGTTCGAATATGGGGAATACGCGAAGAGCGAGTAGTTGATTGGGCAGACATACGAGATGTCATAAGTGCCATAAGTTACCAGAAAGACGCGAAAAGATTTGTAGTTGGTTCTGTTACAGGAACTTGTCACTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCACATATACTTGTCCATGGAAAAAAGAAAGCATCAGGGACCAAGATTACTGGCATTCAGTTTTCCCAAAAAAATCATCAGAGAATTATGATCACATCGGAAGATTCCAAAATTCGCATATTCGATGGCATTAAGCTTATTCATAAATACAGAGGTCTTCCAAAATCAGGAAGCCATATGCATGGTTCATTTACATCAAATGGAAAACATATAATTTCAGTTGGAGAAGATTCTCATGTGTATATTTGGAACCACAATGACACTAAAAAAGCTTCCACCAAACAGAAAAAAACTGAGTACTCCTGTGAGTACTTTTTCTCCAAGGGTGTTACTATTGCAATACCTTGGTCAGGCATGAATGCAGAACAAAAGGGCCCTTGTAGTAATTTTGTGCAGCATCATTCTTCAGAATTGCAAAACCAACTAGAGGTTGCTGCTGGAAGAGATTCAGAGCGTTTTTCTCTGGGTAGTTGGTTTTCGATCGATGGTACATGCCGAGGCTCGACGACATGGCCCGAAGAGAAACTTCCATGCTGGGATTTACCTCTTGCAAAAGAAGAATATGAAAAGCATAAGTTATATCACAAAGATACTTCTCTTGATAGAGGGGTACCAGAAACATGGGGACTATCAATTGTGGCTGCTGGTTGTGATGGAACTATTAAGACATTCCACAACTTTGGATTGCCCATTAGGCTTTAA 1947 0.3996 MLSSNEGDNDVFFDSIDSLSPQDCGLTKQEFSSEYEIWVNEPLSVKERRGRFLQAMGLFETSASKISSQEKMVNLERIKECSGAVSNACNLVLSGCKAASETEALFDGLKGRPQLKPDVSFERKVHELSFTGHEHRHRETEAREECRDFEMGIKKKKKKWWFKKVGEGKVRSKLNTGTNRTHRVKVRQNKKRWLEFSGLYIGQQIRAHQGLIWTMKFSPNGHYLASGGDDGVVRIWHVISLDTSSICFTTEDSTASKLKFENSYHQKNLSNQSFIFLPNKVFQIEESPLQEFYGHFSDVLDLAWSNSDILLSSSMDRTVRLWKIGCNQCLSVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVVDWADIRDVISAISYQKDAKRFVVGSVTGTCHFYVASGKYFQLEAHILVHGKKKASGTKITGIQFSQKNHQRIMITSEDSKIRIFDGIKLIHKYRGLPKSGSHMHGSFTSNGKHIISVGEDSHVYIWNHNDTKKASTKQKKTEYSCEYFFSKGVTIAIPWSGMNAEQKGPCSNFVQHHSSELQNQLEVAAGRDSERFSLGSWFSIDGTCRGSTTWPEEKLPCWDLPLAKEEYEKHKLYHKDTSLDRGVPETWGLSIVAAGCDGTIKTFHNFGLPIRL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0936 648 PRINTS G protein beta WD-40 repeat signature 224 238 IPR020472 -
Lal19g0936 648 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Lal19g0936 648 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Lal19g0936 648 SMART WD40_4 326 365 IPR001680 GO:0005515
Lal19g0936 648 SMART WD40_4 198 237 IPR001680 GO:0005515
Lal19g0936 648 SMART WD40_4 285 323 IPR001680 GO:0005515
Lal19g0936 648 SMART WD40_4 367 406 IPR001680 GO:0005515
Lal19g0936 648 SMART WD40_4 421 457 IPR001680 GO:0005515
Lal19g0936 648 SMART WD40_4 458 499 IPR001680 GO:0005515
Lal19g0936 648 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 648 - -
Lal19g0936 648 Pfam WD domain, G-beta repeat 287 323 IPR001680 GO:0005515
Lal19g0936 648 Pfam WD domain, G-beta repeat 328 364 IPR001680 GO:0005515
Lal19g0936 648 Pfam WD domain, G-beta repeat 205 236 IPR001680 GO:0005515
Lal19g0936 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 332 IPR001680 GO:0005515
Lal19g0936 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 238 - -
Lal19g0936 648 Gene3D - 197 529 IPR015943 GO:0005515
Lal19g0936 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 367 - -
Lal19g0936 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 374 IPR001680 GO:0005515
Lal19g0936 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 478 508 IPR001680 GO:0005515
Lal19g0936 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 324 - -
Lal19g0936 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 238 IPR001680 GO:0005515
Lal19g0936 648 PANTHER WD REPEAT DOMAIN 44 1 648 IPR040324 -
Lal19g0936 648 SUPERFAMILY WD40 repeat-like 199 508 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0936 Lal-Chr19 13379921 13384245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0936 186 396 Acyl Lipid Metabolism Gene Families AT3G18860 26.728 1.49e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0936 K20241 - gmx:100819135 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0936 19 13379921 13384245 Lal17g0727 17 5148346 5152072 PCT
Lal19g0936 19 13379921 13384245 Lal21g0657 21 5027501 5031230 PCT
Lal19g0936 19 13379921 13384245 Lal4g0619 4 4568558 4578994 PCT
Lal17g0727 17 5148346 5152072 Lal19g0936 19 13379921 13384245 PCT
Lal21g0657 21 5027501 5031230 Lal19g0936 19 13379921 13384245 PCT
Lal4g0619 4 4568558 4578994 Lal19g0936 19 13379921 13384245 PCT