Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0935 ATGGTGCGAGACGATTTATACATCACGGTTCCCAGTTTCTTCCTGTGCCCTATTTCCCTCGACGTGATGAAATCTCCTGTGAGTCTATGCACCGGAGTTACTTACGACCGCAGCAGCATCCAACGCTGGCTTGATAACGGTAACAACACTTGCCCTGCCACGATGCAAGTTCTTTACACTAAAGATTTCGTTCCTAACCGTAACTTGCAGAGCCTTATTCAGATCTGGTCTGACTCGGTTCAAAATCGGGTTGACTCGCCCGAGTCCAAAGCGGTTACTGAATCTGAATTAGTACCTTCCCGTGACCAAGTACTCTCCGCCATCGCTGACGTGGAGAGGCACTGCGAGAATAACCGAGTTGACTCGCTCGTGAAAATCGTTCGTTTCGCTCTGGATTCCGATGAGAATCGCGATTTTCTCGCGAAGGTTGATGGCTTCGTGGCTAGGCTGGTTGGTTTGCTTCACAATGTTGATGGTGGTGTTGAATTACTTGAGATGGTTTTGAAGGCGTTGGATTTGGTTCTAGAGAAAATCGATGATCGTGAGTGGTTGAAAAATTCGATGCTGAAGAGACAGAGCGAAGGAGAAAACAGATGCAACTGCTTAGATTCCCTGCTTCTCGTTTTACAACGAGGAAGCTCTGGTTCTAAGATTGCATCACTTAGAGTTTTGAAATCCATTACCATGGACGCAGAATCGAAGCTCTTGATAGCCGAAAAGGAAGGCCTGGTATCGGAATTGCTCAATCTAATCGAACCGGAGAAAACACCGGCCGTAATTGAAAACTGCTTATCGTGTTTGATCGCAATTTCAACGCCAAAACGGAACAAGGTGAAGCTAGTACATCTCGGAGCCATAAGAACATTCTCGAAACTTCTACTGGAATCAAATTTGGCCGTTTCGATTGTGGAAAAAGTGTTGAAGCTGTTGGAAACGATGTCGTCTAGGAAGGAAGGGAGGGTTGAGATATGCGAGGACCCGGAGTGTGTGGCGGCGATACTGAACAAGGTTATGAAGGTTTCGAGCGTAGCGACGGAGAACGCGGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGTGATCAGAAGGCGCAAGAAGCGGTTATCAAGGGAAACGGCTTAACTAAGATTCTGCTTCTGATGCAGAGTAATTGTTCTCCCTCTGTGCGCCAAATGTGTTCAGATTTGCTTAAGATTTTTCGGGTTTATTCTAAGTCTTGTCTCTCTTGTTATGACACCAAAACTACTCATATTATGCCCTTTTGA 1266 0.4621 MVRDDLYITVPSFFLCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLYTKDFVPNRNLQSLIQIWSDSVQNRVDSPESKAVTESELVPSRDQVLSAIADVERHCENNRVDSLVKIVRFALDSDENRDFLAKVDGFVARLVGLLHNVDGGVELLEMVLKALDLVLEKIDDREWLKNSMLKRQSEGENRCNCLDSLLLVLQRGSSGSKIASLRVLKSITMDAESKLLIAEKEGLVSELLNLIEPEKTPAVIENCLSCLIAISTPKRNKVKLVHLGAIRTFSKLLLESNLAVSIVEKVLKLLETMSSRKEGRVEICEDPECVAAILNKVMKVSSVATENAVTTLWSVCYLFRDQKAQEAVIKGNGLTKILLLMQSNCSPSVRQMCSDLLKIFRVYSKSCLSCYDTKTTHIMPF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0935 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 98 IPR013083 -
Lal19g0935 421 SUPERFAMILY ARM repeat 117 400 IPR016024 -
Lal19g0935 421 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lal19g0935 421 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 421 - -
Lal19g0935 421 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lal19g0935 421 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lal19g0935 421 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lal19g0935 421 SUPERFAMILY RING/U-box 5 79 - -
Lal19g0935 421 PANTHER WDSAM1 PROTEIN 4 421 IPR045185 GO:0061630
Lal19g0935 421 Gene3D - 184 407 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0935 Lal-Chr19 13359583 13360848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0935 1 421 U-box Gene Family AT5G09800 54.439 2.95e-139 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0935 - - gmx:100799627 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1370 14 15096584 15097840 Lal19g0935 19 13359583 13360848 LSH