Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0932 ATGTATGCTTCTACTTCACACCTTGTCCATGACCTTCTTGGAGACTCTCACACAAGAAGGTTACTCCTTCAAATCACACTTAACCAATTACCCAACTCAGCCAATTCCCCTGCAGCTTCCATACATAGCCACAACTCAACAAGCCTATTTTCTCGAGGCCGTAATTTCGATGCGAATGTTGTCATGTTACTCTCAATTCTATTATGTGGTGTTATTTGCTTTCTCAGCTTGATCGCCATCATAAGGTGTGTCTTAACGTGTTCAAATTATTCATCCAGAACAAGCAACCATTCGCCAAAATTAGCAAACACAGGAATTAAGAAGAAAATTATGAAGACTTTCCCTATAGTTACCTACTCGGCTGAGATGAATCTTCGAGGTTTGGACACTGAGTGTGTGATATGCCTCTCAGAGTTCACCAAAGACGACAAGGTTCGCATTTTACCTAAGTGCAACCATGGTTTTCATATTCCTTGCATTGATAAATGGTTGAGTTCACACTCGTCTTGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGCCACAAAATTGTTGTATCACAACCTGCAACTGTGGTGCCACTGCCACTGCCAGTGCCAGAAATCATTATAAGGATTGAACCACTTGAGCCAGAAGGTTTGGTGTGTAACTACAGGGAAGCAAGCTAA 669 0.4245 MYASTSHLVHDLLGDSHTRRLLLQITLNQLPNSANSPAASIHSHNSTSLFSRGRNFDANVVMLLSILLCGVICFLSLIAIIRCVLTCSNYSSRTSNHSPKLANTGIKKKIMKTFPIVTYSAEMNLRGLDTECVICLSEFTKDDKVRILPKCNHGFHIPCIDKWLSSHSSCPKCRQCLIETCHKIVVSQPATVVPLPLPVPEIIIRIEPLEPEGLVCNYREAS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0932 222 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 221 - -
Lal19g0932 222 PANTHER RING-H2 FINGER PROTEIN ATL78 4 221 IPR044602 GO:0016567|GO:0016740
Lal19g0932 222 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lal19g0932 222 SUPERFAMILY RING/U-box 110 179 - -
Lal19g0932 222 SMART ring_2 132 173 IPR001841 -
Lal19g0932 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 178 IPR013083 -
Lal19g0932 222 CDD RING-H2_PA-TM-RING 131 174 - -
Lal19g0932 222 Pfam Ring finger domain 131 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0932 Lal-Chr19 13311265 13311933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0932 41 183 C3H Transcription Factor Family AT1G76410 43.243 3.87e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0932 K19040 - gmx:100780127 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0932 19 13311265 13311933 Lal19g0932 19 13311265 13311933 ECH
Lal14g1363 14 15062742 15063416 Lal19g0932 19 13311265 13311933 LSH
Lal7g0808 7 14823609 14824630 Lal19g0932 19 13311265 13311933 LSH
Lal19g0932 19 13311265 13311933 Lal17g0724 17 5117173 5117862 PCT
Lal19g0932 19 13311265 13311933 Lal4g0616 4 4538163 4538840 PCT
Lal17g0724 17 5117173 5117862 Lal19g0932 19 13311265 13311933 PCT
Lal4g0616 4 4538163 4538840 Lal19g0932 19 13311265 13311933 PCT