Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0926 ATGGATTTGGAGGATTTTCGATCCATAATGGAGAGTGCCAGCGTGGACGTTTGGTTATTGATGGACGCTGCAATCGCCGTCGCTTCCATCGATAACGTCGACGAATTGAAACGACGAAGAGACCAAATCGTTGAGCGTCTTTACACCGCCACGTCAGCACCACCGCCGTGTCGGAATTACGAGACCAATAACAATGAAGAAATCGTTAAAGTGGAGGTGGAAGAGGAGGAGGAGGAGGAGTTGGATCCTTATGGAGGATTATCTGATGATGAACAGAAGAAGATTCTAGAGATTAAACAACAACTTGAATACCCTAACCAGCTTAACTCTGATGTTTATTTATGTTTTCTTCATCAGTCTGAAGAATCCTTGATGGAGCTGCTACATACACTCGCTGACATGGATATTACATTCGAAGAATTACAGGATACTGACATTGGGAGGCATGTGAATAAGTTGCGGAAGCATTCCTCCAATGATGTTAAGAAATTGGTGAAGCTTCTTGTCAGTAAATGGAAAGGAATTGTAGATGAATGGGTGAAGTCAAAGACACTGGGAGAAGAAGTTACTAATGTCATGGCAGTTGATGAAGATTCGCCTCAGCAGAAAACCACACAGAATGGGCATCATCAGAGTCCTGAGTTTGCACACTCACCAAATCAACACAATGGAAATTCTGGGTCAGAAGTAGAACTGAAAAAAGCTAAAGCAATTCCTCGCAAAGTAGCTCCTCCAAAACCAGCATATGCACCACCATCACTTCGTACTTCTGATCCTCAAAATAGACAGAGGGAACACAATCTTGACTCTGAGAGACTTGATTATGCTACAAAACGGCTCCAAGAGAACTATAAAGAAGCTGCAAATGCTAAAAAACAGAGAACAATCCAAGTTATGGATCTGCATGAGTTACCAAAACCCAAGAACAAGAATGTCTTCTTTGCAAAGAAATAA 954 0.4203 MDLEDFRSIMESASVDVWLLMDAAIAVASIDNVDELKRRRDQIVERLYTATSAPPPCRNYETNNNEEIVKVEVEEEEEEELDPYGGLSDDEQKKILEIKQQLEYPNQLNSDVYLCFLHQSEESLMELLHTLADMDITFEELQDTDIGRHVNKLRKHSSNDVKKLVKLLVSKWKGIVDEWVKSKTLGEEVTNVMAVDEDSPQQKTTQNGHHQSPEFAHSPNQHNGNSGSEVELKKAKAIPRKVAPPKPAYAPPSLRTSDPQNRQREHNLDSERLDYATKRLQENYKEAANAKKQRTIQVMDLHELPKPKNKNVFFAKK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0926 317 Coils Coil 57 77 - -
Lal19g0926 317 MobiDBLite consensus disorder prediction 197 228 - -
Lal19g0926 317 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 118 183 IPR035441 -
Lal19g0926 317 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 87 189 IPR035441 -
Lal19g0926 317 SMART TFS2_5 95 178 IPR003617 GO:0005634
Lal19g0926 317 CDD TFIIS_I 92 177 - -
Lal19g0926 317 ProSiteProfiles TFIIS N-terminal domain profile. 90 179 IPR017923 -
Lal19g0926 317 MobiDBLite consensus disorder prediction 197 273 - -
Lal19g0926 317 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 316 - -
Lal19g0926 317 Pfam TFIIS helical bundle-like domain 126 176 IPR017923 -
Lal19g0926 317 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 316 IPR044790 -
Lal19g0926 317 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0926 Lal-Chr19 13274483 13276975 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal19g0926 Med26 5.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0926 - - aip:107630962 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0801 7 14792722 14794642 Lal19g0926 19 13274483 13276975 LSH
Lal19g0926 19 13274483 13276975 Lal17g0707 17 4996202 5000646 PCT
Lal19g0926 19 13274483 13276975 Lal21g0650 21 4970222 4973481 PCT
Lal19g0926 19 13274483 13276975 Lal4g0610 4 4473640 4476967 PCT
Lal17g0707 17 4996202 5000646 Lal19g0926 19 13274483 13276975 PCT
Lal21g0650 21 4970222 4973481 Lal19g0926 19 13274483 13276975 PCT
Lal4g0610 4 4473640 4476967 Lal19g0926 19 13274483 13276975 PCT