Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0919 ATGGCGGCGTTTCTGAACAAAACCTACGCCATGGTTGACGACTCCGCCACCGAATCGGTGGTGTCTTGGGGCGATAAAAACACCACCTTCGTCGTTTGGAATGTCCACGTTTTCTCCACTCATATCTTGCCCAAATATTTCAAACACAACAACTTCTCTAGCTTCATCAGACAATTAAATACATATGGTTACATCAATTTGTTTTTGTTTATGGTCCTGGTCCCGGTTACCCTAATCAACGGTGATTGGGTTGTGGTCCGTTTTACTATGTTTGGGTTATATGGGTTTGCATACTCATCCAGTGTTAAGGGCACTGCCGTGCTGGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCACATGAAGGGTTCTTAAGGGGTCAAAAACAACTTTTGAAAAGTATCAGTAGACAGAAATCTGCTCATGTAAATGGTTGCAATAAAGAAACATGTCAGGTGCAGAACTCACCTGTTGGGAAATGCATAGAAATGGGCAAGTTTGGGCTGGAGGAACAGGTAGAAAGACTGAAGAGGGATAAAAATGTTATCATGCAGGAAATTGTTAGGTTGAGACAGCAACAACAAACAACTGATAACCAATTACAAACTGTTGGGCAACATATGCAAATAATGGAGCAGCGTCAGCAACAGATGATGTCATTCCTGGCGAAGGCCATGCACAGTCCTGGTTTCTTGTCTCAGTTTGTAGAGCATCAGAATGAAAGTAATAGACAAATTACTGAAATTAATAGAAAGAGGAGGTCCCACATGCAGGAAGAAGATAGTGTAGCCACCAAGAATGTTCATATTGCTCTTGATGAACGTGTTGCCAAGTACCAGCCTTTTATAGATGAGGCAGCGAAAGCATTATTTTTGCAGATATCGCAAATGAACAATTCTACAAAGATGGAATCATCAATTAAGAATCCTGATGCTTTCATTGTTAATGATGTTCCTTCGGCCATTGCATTAAACAACTGTAGTTCATCTACTCAGGTTTCTGGTTTAACCCTTTCTGAGGTTCTTCCTACTTCAGTGCAATCATATACGGCAGTGGAGTCACAACTTCCTGTCAATTGTATGTCCAAGAGCAGAACTGAGGTACAATCTTCACCTGCTGTGTTGACCGATTGTGTCAGAGCATCTGAAATTCCCGAATTAACTGCGCATAACTGCCAAGACAATGTTTTGGATTTTGGTGAAGTTCAGGGGATGGGGACAGAAGGCAGCTTAATCGATTCTGGTCTGAATTTTGCGGGGCTTGACATTGGGAACGTTGAGGAGATAAATATGATGCCAACTGTTTTATATGAAACACTGTCTGTAGAAGCTGATGCTTTTTTGCCTGATGCAGATGGGATTTCTATGCTTCCAGGAATCAATGAATTCTGGTCATGCCCTCCTACTGGAGATACAGATGAAGTTACACGTAGCTCTCTAGAATATGGTTTGATGGGAGACCTTGAGTTATCATCAGAAAAGGAGATTCGACCGGAAAAGATGGATTAG 1512 0.42 MAAFLNKTYAMVDDSATESVVSWGDKNTTFVVWNVHVFSTHILPKYFKHNNFSSFIRQLNTYGYINLFLFMVLVPVTLINGDWVVVRFTMFGLYGFAYSSSVKGTAVLGFRKVDPDRWEFAHEGFLRGQKQLLKSISRQKSAHVNGCNKETCQVQNSPVGKCIEMGKFGLEEQVERLKRDKNVIMQEIVRLRQQQQTTDNQLQTVGQHMQIMEQRQQQMMSFLAKAMHSPGFLSQFVEHQNESNRQITEINRKRRSHMQEEDSVATKNVHIALDERVAKYQPFIDEAAKALFLQISQMNNSTKMESSIKNPDAFIVNDVPSAIALNNCSSSTQVSGLTLSEVLPTSVQSYTAVESQLPVNCMSKSRTEVQSSPAVLTDCVRASEIPELTAHNCQDNVLDFGEVQGMGTEGSLIDSGLNFAGLDIGNVEEINMMPTVLYETLSVEADAFLPDADGISMLPGINEFWSCPPTGDTDEVTRSSLEYGLMGDLELSSEKEIRPEKMD 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0919 503 Coils Coil 167 194 - -
Lal19g0919 503 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 3 64 - -
Lal19g0919 503 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 98 490 - -
Lal19g0919 503 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 98 490 IPR027725 -
Lal19g0919 503 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 64 IPR027725 -
Lal19g0919 503 Gene3D - 1 140 IPR036388 -
Lal19g0919 503 SUPERFAMILY "Winged helix" DNA-binding domain 3 138 IPR036390 -
Lal19g0919 503 SMART hsfneu3 1 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0919 503 Pfam HSF-type DNA-binding 4 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0919 503 PRINTS Heat shock factor (HSF) domain signature 4 27 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0919 503 PRINTS Heat shock factor (HSF) domain signature 42 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0919 503 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0919 Lal-Chr19 13205236 13208555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0919 1 482 HSF AT5G16820 40.637 3.80e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal19g0919 HSF_DNA-bind 1e-27 CL0123