Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0895 ATGATGACCGCTATGTCTTGGAGGCATGTTGCCAATAATGGCAGCAGCCTTTCTGATCTGGAAAGAAATGGTGATGAGAAGACTCAAGTTTCGGAGCCTCCAACTCCACATTCTGTTCTGAAGATGGGGTTAAGAGACCGTAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAAAACTCATCCTCTGCGCAAGAGAAAGAGTATTCCTTAAAGCAGTTATTGGAGCTTATAGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCATTCTCAAGCCGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGCTTCATTGAATGTGAAGATACAGGCAGCAATTGTCTTGGGCTCTCTTTGTAAAGAAAACGAGCTTAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTCTACTAAAGTCTAGTTCTACTGAAGGGCAAATTGCTTCTGCAAAGACCATTTATGCTGTCTCTCAAGGTGGTGTAAAAGATCACGTAGGCTCAAAAATATTTTCAACTGAAGGAGTTGTACCAGTACTGTGGGAGAAGCTGCAAAAGGGCCTGAAGGCAGGAAATGTAGTTGAAAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAATACTGAGGGATTTTGGAACACAACAATACAAGCTGGAGGAGTGGACATATTAGTTAAGTTACTAGCAACAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCTGCTGTAATGATGGAGGACGCATCTGTTTGTTCAAAGGTGTTGACAGCAGATGTGACAAAACAACTCCTGAAACTGTTAGGCCCTGGTAATAATGACCCTGTTAGAGCTGAAGCAGCAGGTGCTCTTAAATCTCTATCTGCACAATGCAAAGGCGCAAGGCGAGAGATAGCAAATTTTAACGGTATTCCTACTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATACATGCAGGGTGAGTGTGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTGGCAAACATCTCTGGTGGTTTGTCTAATGTCATATCTAGCCTTGGTCAAAGCCTTGAATCATGCACCTCTCCTACCCAAGTTGCTGACACATTAGGAGCTTTAGCTTCAGCTCTTATGATATATGATAACAATGCCGAATCTACCAGAGCATCAGATCCTTTGGCAGTTGAGCAGACATTACTGAAACAGTTTAAACCTCGCTTGCCATTCCTTGTGCATGAACGCACTATTGAATCCCTAGCTAGTTTGTATGGCAATCCTGTGCTGTCAATTAAACTTGCAAATTCTGATGCAAAACGGTTGCTTGTTGGTTTAATAACAATGTCTGTCAATGAAGCACAAGATGAGCTTGTAAAAGCTTTCTCGACACTGTGCAATAGTGAAAGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTCTAGGACTTTCATCAGAACAGCAGCAAGAATGTGCAGTCGCTCTTCTTGGCCTTCTATCTAATGAAAATGATGAAAGTAAGTGGGCCATTACTGCGGCTGGTGGTATACCTCCACTTGTTCAGATTTTGGAGACAGGATCTGCAAGAGCAAAGGAAGAATCAGCAACAATCCTTAAGAACCTATGCAATCACAGTGAAGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTTTTGAAGAATGGAAGCTCTAACGGGAAGGATATTGCAGCAAAGACCTTACATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAATCTAAGGTTTATGTTTTGGATGCTTTAAGAAGTATGCTTTCTGTTGCTCCTCTTAGTGACATTCTGCGTGAAGGTAGTGCTTCCAGTGATGCATTTGATACCATGATAGCATTATTGAGCTCTACCAAGGAAGAAATTCAGGCAAAGTCTGCATCTTCTCTAGCAGGAATTTTCAAAATGAGAAAAGATGTTCGTGAAAGCAGCATTGCTGTTAAAACACTTTTGTCAGCCATCAAGTTGCTTAATGCTGAATCTGAAAGTATCCTAATGGAGTCCTCACACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGGTGTTGCTAGAGATGCACTATCCCCACTAGTTGCACTAGCTAACGCTTCAGTTTTGGAAGTTGCAGAGATGGCAACGTGGGCTGTGGCTAATATTATTTTGGATAGTGGAACTGCGGAGAAAGCTCTTACGGAAGAAGTTATCTTGCCTGCAACCAGAGTATTATGTGAAGGCACAATTTCTGGTAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCGCAAAGTTGACGATGCTGTAACTGATTGTGTGAATCGTGCTGGCACTGTTCTCGCATTAGTTTCTTTCTTAGATTCTGCTATTAATGAATCTGTTTCCACATCAGAAGCTCTAGAAGCACTTGCCATTTTATCCAGGTCAGAAGAGACCTGTGCACATATTAAACCTGCATGTGCAGTTTTGGCTGAAGTCCCTGGAAGCATATGTCCGATAGTCCTGTCTATTGCTCATTCGACACCTGTGTTTCAGGATAAAGCTATTGAGATATTATCCCACTTATGCAAGGACCAGCCTGTTATTTTAGGAGATACAGTTGCTACTGCCTCTGGGTGTATATCTTCAATAGCTAAAAGGATAGTTAGTTCCACAAATGTAAAGGTCAAAATTGGGGGAGCTGCACTTCTTATTTGTGCTGCAAAGGCAAATCATCAGAGACTATTCGAGGATCTCAATTTATCAACCATATGCACTAGTCTTATTCAGGCTCTAGTTGATGTGCTTATTTCCGCACTGTCTTCTTCAGGCAATGAGGGTGATGATAGCAAGGAACTCATCAGCATATGCAGGCGTACAAAAGAAGATGCTAACAATGGCGAATCCAACACTGGCACCACCATTATATGTGGTGCCGACTTAGCTATATGGTTACTGTCTATTCTTGCTTGTCATGATGAGAAAAATAGAACTGCAATAATGGAGGCTGGAGCAGTTGATGTTCTTACAGATAGGATCTCAAATTGTGGCTCACAATATTCTCAGATTGATAACAAAGAAGATAGCAGCATGTGGATAAGTGCTTTGTTGTTAGCCATATTATTTCAAGATAGAGATATCATACGAGCACATGCAACCATGAAATCTGTACCAGCATTTGCTAATTTGTTGAGGTCAGAGGAATTGGCAGACAAATATTTTGCTGCGCAATCAATAGCTAGCCTAGTCTGCAATGGTAGTAGAGGAACACTTTTGTCTGTTGCAAATTCTGGGGCAGCAGGTGGGCTTATATCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAGATGTCAGAGGAATTTTCTTTGGTCCGGTACCCTGATCAAATTTCTCTGGAGAGGTTGTTTAGAGTTGATGATATAAGAGTCGGTGCCACTTCTCGGAAGGCAATACCTGCACTAGTTGATCTTCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGATTCAGCTTGCTAGAGATTGCCCATCGAATAAGATTATAATGGTAGAGTCTGGGGCCTTAGAGGCACTTACAAAGTATCTTTCACTGAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTTTTTAGTAGCGCTGACATACGGAAACATGAGTCAGCATTTGGTGTTGTTTCTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTACAAAAGCCTTGGAAAGTTTATTCTCTGCTGACCATATTAAAAATGCAGAGACTGCTCGACAAGCGGTTCAACCCTTGGTGGAGATACTCAGTACTGGTTCAGAGAAGGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTGCTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCGGTGGATGTTCTTTGCAGGATCCTTTCATCTGATTGTTCAATGGACCTCAAAGCGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGTTCCACGATGTCTGCTGCACGCTGTGTTGAACCTCTAGTCTCTCTCCTTGTAACTGAGTCTAGTCCTGCTCAGCATTCAGTTGTTCGTGCATTGGATAAGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTGTATGGTAGGAACTATATACTTCATGAGGCTGTTTCCAGAGCTTTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGATATGGTGAAAGCTGGAGTTATTGAAAGAATACTTGACACATTACATGAAGCACCTGATTTTCTATGTGCAGCTTTCGCAGAATTACTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTCGTTGAACCCTTGTTTTTGTTGCTGACAAGACAAGAAGTTGCACCTGATGGACAGCATAGTGCACTGCAGGTTTTGGTTAATATCCTAGAACATCCACAGTGCCGTGCTGACCATAGATTTACTTCTCACCAAGTTATTGAACCACTTATCCCCTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAACTTCTTTCACATCTACTTCTAGAAGAACACCTTCAGAAGGATCCAGTTACACAGCAGGTAATTGGTCCTCTTATACAATGTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTATTGCACTAATTTGGCCAAATGAAATTGCTAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTGATATTGCAAGCTGATCCTTACCTTCCTCATGCGTTATGGGAGTCTGCTGCATCTGTTTTGTCAAGCATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCTATTGCTGTTTTAGTAAGGCTGCTTCGATCTGGATCAGATGTCACTGTTCTTGGTGCTTTAAATGCTCTTCTAGTGTTGGAAAGTGATGATGGAACTAGTGCAGTAGCAATGGCTGAGAGTGGTGCCATAGAGGCTCTCTTGGAGCTCTTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCTTAGAAGTACTGTTAAACAATATAAAGATCCGAGAAACAAAAGCTACCAAGTCAGCTATCTTACCATTATCTCAGTACCTCTTGGATCCACAAACCCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTTGGGGACCTGTTCCAGAATGAGGGTCTTGCTCGAACAGCTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACGGAAGAAATAAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAACAAAAGAGCAGTTGCAGAAGCTGGCGGTGTTCAAGTTATATTGGATCTGATAGGTTCAAGTGAACCAGAAACATCTGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCCAGTGAAACAGTCAGATCGATAACTGCCACTATTGAAAAAGATTTATGGGCTAGTGGTACTGTGAATGAAGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGACTAAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTACTTCCTTGAAATCAGGCTCTGAGGGTTGTCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGACAGGCTTGGTCAGCATGCCCAGCTGAAGTTTCAAAAGCTCAGTCAGTAGCAGCTGCAGATGCTATTCCATTTCTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTCTGTTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCCGTTGGGAACCCGAGTGTTTACTGTAAGCTTACACTTAGCAACACTCCACCAAAGCAAACCAAGGTGGTCTCAACTGGCCCAAATCCGGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGACAGAAGCTTAACATTTCATGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATTCAGATTGATAGAGTTGTAATGCTTGGAGCAGTAGCTGGAGAGTACACACTATTGCCTCAAAGTAAAAGTGGACCCCCAAGGAATCTAGAAATAGAATTCCAGTGGTCTAACAAGTGA 6450 0.4267 MMTAMSWRHVANNGSSLSDLERNGDEKTQVSEPPTPHSVLKMGLRDRSSSMEDPDGTLASVAQCIEQLRQNSSSAQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSASLNVKIQAAIVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSTEGQIASAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEKLQKGLKAGNVVESLLTGALKNLSSNTEGFWNTTIQAGGVDILVKLLATGQSSTLANVCFLLAAVMMEDASVCSKVLTADVTKQLLKLLGPGNNDPVRAEAAGALKSLSAQCKGARREIANFNGIPTLINATIAPSKEYMQGECAQALQENAMCALANISGGLSNVISSLGQSLESCTSPTQVADTLGALASALMIYDNNAESTRASDPLAVEQTLLKQFKPRLPFLVHERTIESLASLYGNPVLSIKLANSDAKRLLVGLITMSVNEAQDELVKAFSTLCNSESSLWRALQGREGVQLLISLLGLSSEQQQECAVALLGLLSNENDESKWAITAAGGIPPLVQILETGSARAKEESATILKNLCNHSEDIRACVESADAVPALLWLLKNGSSNGKDIAAKTLHHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVAPLSDILREGSASSDAFDTMIALLSSTKEEIQAKSASSLAGIFKMRKDVRESSIAVKTLLSAIKLLNAESESILMESSHCLAAIFLSIKENRDVAGVARDALSPLVALANASVLEVAEMATWAVANIILDSGTAEKALTEEVILPATRVLCEGTISGKTHAAAAIARLLHSRKVDDAVTDCVNRAGTVLALVSFLDSAINESVSTSEALEALAILSRSEETCAHIKPACAVLAEVPGSICPIVLSIAHSTPVFQDKAIEILSHLCKDQPVILGDTVATASGCISSIAKRIVSSTNVKVKIGGAALLICAAKANHQRLFEDLNLSTICTSLIQALVDVLISALSSSGNEGDDSKELISICRRTKEDANNGESNTGTTIICGADLAIWLLSILACHDEKNRTAIMEAGAVDVLTDRISNCGSQYSQIDNKEDSSMWISALLLAILFQDRDIIRAHATMKSVPAFANLLRSEELADKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLEMSEEFSLVRYPDQISLERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLIQLARDCPSNKIIMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSADIRKHESAFGVVSQLVAVLRLGGRAARYSATKALESLFSADHIKNAETARQAVQPLVEILSTGSEKEQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSDCSMDLKADAAELCCALFGNTRIRSTMSAARCVEPLVSLLVTESSPAQHSVVRALDKLVDDEQLAELVAAHGAVVPLVGLLYGRNYILHEAVSRALVKLGKDRPACKMDMVKAGVIERILDTLHEAPDFLCAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEVAPDGQHSALQVLVNILEHPQCRADHRFTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIQCLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPYLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSDVTVLGALNALLVLESDDGTSAVAMAESGAIEALLELLRSHQCEETAARLLEVLLNNIKIRETKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTADAVSACRALVNVLEDQPTEEIKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSEPETSVQAAMFVKLLFSNNTIQEYASSETVRSITATIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKSGSEGCQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLSNTPPKQTKVVSTGPNPEWDESFSWSFESPPKGQKLNISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPQSKSGPPRNLEIEFQWSNK 2149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0895 2149 Gene3D - 798 1168 IPR011989 -
Lal19g0895 2149 SUPERFAMILY ARM repeat 1185 1565 IPR016024 -
Lal19g0895 2149 Gene3D - 1177 1362 IPR011989 -
Lal19g0895 2149 Gene3D - 650 794 IPR011989 -
Lal19g0895 2149 SMART C2_3c 2029 2125 IPR000008 -
Lal19g0895 2149 Pfam C2 domain 2028 2119 IPR000008 -
Lal19g0895 2149 SUPERFAMILY ARM repeat 54 641 IPR016024 -
Lal19g0895 2149 SUPERFAMILY ARM repeat 658 988 IPR016024 -
Lal19g0895 2149 Pfam Armadillo/beta-catenin-like repeat 523 562 IPR000225 GO:0005515
Lal19g0895 2149 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2028 2131 IPR035892 -
Lal19g0895 2149 Gene3D - 49 420 IPR011989 -
Lal19g0895 2149 SMART arm_5 1855 1895 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 815 857 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 565 605 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1564 1605 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1479 1519 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1728 1767 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1812 1853 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 92 133 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1607 1646 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1309 1350 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 479 521 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 266 307 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1227 1268 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 134 174 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 309 358 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1396 1436 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 731 769 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 1437 1477 IPR000225 GO:0005515
Lal19g0895 2149 SMART arm_5 523 563 IPR000225 GO:0005515
Lal19g0895 2149 Gene3D - 1363 1667 IPR011989 -
Lal19g0895 2149 Gene3D - 1674 1793 IPR011989 -
Lal19g0895 2149 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 17 2149 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lal19g0895 2149 SUPERFAMILY ARM repeat 928 1157 IPR016024 -
Lal19g0895 2149 ProSiteProfiles C2 domain profile. 2009 2126 IPR000008 -
Lal19g0895 2149 CDD C2 2030 2120 - -
Lal19g0895 2149 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 576 IPR000225 GO:0005515
Lal19g0895 2149 Gene3D - 1794 2026 IPR011989 -
Lal19g0895 2149 MobiDBLite consensus disorder prediction 1 55 - -
Lal19g0895 2149 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1194 1238 IPR000225 GO:0005515
Lal19g0895 2149 SUPERFAMILY ARM repeat 1578 1980 IPR016024 -
Lal19g0895 2149 MobiDBLite consensus disorder prediction 1 19 - -
Lal19g0895 2149 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1823 1866 IPR000225 GO:0005515
Lal19g0895 2149 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 17 2149 - -
Lal19g0895 2149 Gene3D - 449 649 IPR011989 -
Lal19g0895 2149 Gene3D C2 domain 2027 2149 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0895 Lal-Chr19 12962108 12972844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0895 432 608 U-box Gene Family AT3G54790 31.492 2.22e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0895 - - gmx:100794002 3565.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0895 19 12962108 12972844 Lal19g0895 19 12962108 12972844 ECH
Lal19g0895 19 12962108 12972844 Lal17g1612 17 17505150 17515286 PCT