Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0886 ATGACAAGTGCTATAGATATCTATAATAATGATATCAAGATTGCTGAAAATTTCTTAGATCCCTATGATGAAGAGCTTATGAAAGTATTCGAACCTTTCATGAAAAGTGATACCTCTTCGTCACCACATCTTTTAACCATCTCTAATACTCGACTTTTGTCTCCCCTCCCTAGCCCATATCCCAACCTTCCAATATCATTAAACACAATCCAAACCAATTCAATTGGGCTAAATCAACTCACCCCATTTCAAATCATTCAAATTCAAGCCCAAATCCATATTCAACAACAATCACGATATAATTGTGAAGACTCCCAAAACCACAATTTAGAACTTTACTCAGATTCCCTCGAACACCGAAGTCAACACAACTTCAACCTCGCACCAAAACATGTCCCAATGAAGAAACAAACAAAGCTATACCGCGGTGTGAGGCAGCGCCATTGGGGGAAGTGGGTAGCAGAGATAAGACTCCCCAAGAACCGAACGCGCCTCTGGCTCGGCACGTTCGATACTGCGGAAGAAGCAGCGTTGGCTTATGACAACGCTGCTTATAAACTCAGAGGTGAATTTGCACGTCTTAATTTTCCACATTTGAAGCACCAAGGAGCACGTGTGTTTGGTGAGTTTGGAGATTACAACCCTCTACCTTCTTCTGTTCGTGCAAAACTACAAGCTATTTGTGAAAAGTTGGCCAGAAATCAGAAACCAGAAAATTCTGTTGAGGATATAAAGCCAAAGATAGATCATGTTCCTACAGAGGAAAAGTTTGAGGATTTTAAGGTTGAGATGTCTGATGAATATTCAGCTGGTTCTTCTTCCCCTGATTCTGTTGTTACATTCTTGGATTTCTCTGATTCAAATAAATGGGATGAGATGCAGAATTTTGGGTTGGAGAAATACCCTTCTTTGGAGATTGATTGGGATGCTATATGA 936 0.4038 MTSAIDIYNNDIKIAENFLDPYDEELMKVFEPFMKSDTSSSPHLLTISNTRLLSPLPSPYPNLPISLNTIQTNSIGLNQLTPFQIIQIQAQIHIQQQSRYNCEDSQNHNLELYSDSLEHRSQHNFNLAPKHVPMKKQTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGEFARLNFPHLKHQGARVFGEFGDYNPLPSSVRAKLQAICEKLARNQKPENSVEDIKPKIDHVPTEEKFEDFKVEMSDEYSAGSSSPDSVVTFLDFSDSNKWDEMQNFGLEKYPSLEIDWDAI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0886 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 311 - -
Lal19g0886 311 Pfam AP2 domain 141 190 IPR001471 GO:0003700|GO:0006355
Lal19g0886 311 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677
Lal19g0886 311 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700|GO:0006355
Lal19g0886 311 CDD AP2 139 199 IPR001471 GO:0003700|GO:0006355
Lal19g0886 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 311 - -
Lal19g0886 311 Gene3D AP2/ERF domain 140 198 IPR036955 GO:0003700|GO:0006355
Lal19g0886 311 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Lal19g0886 311 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Lal19g0886 311 SMART rav1_2 140 203 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0886 Lal-Chr19 12911688 12912623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0886 3 311 AP2-EREBP Transcription Factor Family AT4G39780 49.367 1.10e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal19g0886 AP2 4.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0886 K09286 - gmx:100818839 320.857