Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0866 ATGGATGAGGAAGAGCATGAGGTGTACGGTGGCGAGATCCCAGACGTCGAAGGAGATCATGACAATCCCGACGTCGACATGTCCGTTGCCGATGATGACGCCGCCGTCAAGGAACTGGAGGAGATGAAGCGGCGGTTGAAGGAAATGGAAGAGGAAGCCGCTGCTCTCCGAGAGATGCAAGCTAAGGTGGAGAAAGAGATTGGATCCGTTCAAGATCCTGCTGTTGCTTCTCAGCCCAACAAGGAGGAGGCAGATGCTCGATCTGTGTATGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCTTGTGGTACAGTGAACAGGGTCACCATCCTGACAGACAAGTTTGGACAGCCTAAAGGTTTTGCATATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTCCTCTTGAATGAATCTGAATTGCATGGCCGTCAGCTGAAGGTTTCACCTAAGAGGACTAATGTTCCGGGAATGAAACAGTACCGTCCTAGGCGCTACAATCCTTACATGGCTTATGGCTTCAGGAGGCCATATCCTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAAGCTCCTAGGATTTCTAGGGCAACTCGGTACATGCCTTATTACTAG 648 0.4892 MDEEEHEVYGGEIPDVEGDHDNPDVDMSVADDDAAVKELEEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPAVASQPNKEEADARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALLLNESELHGRQLKVSPKRTNVPGMKQYRPRRYNPYMAYGFRRPYPPPYFYSPYGYGKAPRISRATRYMPYY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0866 215 SUPERFAMILY RNA-binding domain, RBD 77 185 IPR035979 GO:0003676
Lal19g0866 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 213 - -
Lal19g0866 215 Gene3D - 15 170 IPR012677 -
Lal19g0866 215 PANTHER - 1 213 - -
Lal19g0866 215 CDD RRM_II_PABPs 88 159 - -
Lal19g0866 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Lal19g0866 215 Coils Coil 29 66 - -
Lal19g0866 215 MobiDBLite consensus disorder prediction 1 28 - -
Lal19g0866 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
Lal19g0866 215 MobiDBLite consensus disorder prediction 11 28 - -
Lal19g0866 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0866 Lal-Chr19 12763280 12767078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0866 84 159 Eukaryotic Initiation Factors Gene Family AT2G36660 35.065 5.26e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0866 K14396 - gmx:100789721 320.857