Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0860 ATGAAGAGACTTGGAACTTCAGATTCTTTGGGTACCATCATGACAATTTGTTCACAAGAAACAGATGAACATAGTCCAAGGAACAATAATCACGTGTATGGAAGGGATTTTCATTCTATGTTGGAGGGACTTGATGAAGAAGAGTGTAGTATCGAAGAGACACATCACTCTGAGAAGAAAAGAAGACTAAGCGTGGATCAAGTGAAAGCTTTGGAGAAGAACTTTGAGGTTGAAAACAAACTTGAACCAGACAGAAAAGTGAAGCTTGCACAAGAACTTGGGTTGCAGCCTAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGTGCTAGATATAAAACCAAACAATTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCCCTTAGACTTAACTATGATACCCTCCAAAGGGACAACGAGGCTTTACTCAAAGAGATTAAGGAATTGAAATCAAGGGTGCAAGAAGAGAACATTGAAAGTGATGCTTCAGTGAAAGAAGAGATGATAACACTTCAACAAGATTCTTCAGAAGACTTGAAGTATGACTATTTCAACAACAACAGTGATGGTGTTGGAGATGGTTCACTATTCCCTACCGATTTCAATAAAGATGGGTTATCAGATAGTGACTCTAGTGCAATATTGAATGAAGAACAAAACAACAACAGCCCCAATTACAACAAAGCAATTACTTCATCTGGGGTGCTTCAAAGTTCCAACCTTTTGATGAATCCTTCACTCAAATTCAATACTTGTTCATCATCATCTGCACCATCTTCCATGAATTGTTTCCAGTTCCAAAAATCTAATTCTTATCAAGCACAGTATGTGAAGATGGAAGAGCATGATTTCTTCAGTGGAGATGAGGCTTGCAATTTCTTCTCAGATGAACAAGCACCAACACTGCAATGGTACTCTTCTGAGGAATGGAGTTAA 942 0.3843 MKRLGTSDSLGTIMTICSQETDEHSPRNNNHVYGRDFHSMLEGLDEEECSIEETHHSEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARYKTKQLERDYGVLKANYDALRLNYDTLQRDNEALLKEIKELKSRVQEENIESDASVKEEMITLQQDSSEDLKYDYFNNNSDGVGDGSLFPTDFNKDGLSDSDSSAILNEEQNNNSPNYNKAITSSGVLQSSNLLMNPSLKFNTCSSSSAPSSMNCFQFQKSNSYQAQYVKMEEHDFFSGDEACNFFSDEQAPTLQWYSSEEWS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0860 313 Gene3D - 53 121 - -
Lal19g0860 313 SMART HOX_1 57 118 IPR001356 GO:0003677
Lal19g0860 313 CDD homeodomain 59 115 IPR001356 GO:0003677
Lal19g0860 313 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Lal19g0860 313 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Lal19g0860 313 Pfam Homeobox associated leucine zipper 114 156 IPR003106 GO:0006355|GO:0043565
Lal19g0860 313 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 305 IPR045224 GO:0003700
Lal19g0860 313 Coils Coil 127 161 - -
Lal19g0860 313 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Lal19g0860 313 SUPERFAMILY Homeodomain-like 43 116 IPR009057 -
Lal19g0860 313 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Lal19g0860 313 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 305 - -
Lal19g0860 313 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0860 Lal-Chr19 12689083 12691725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0860 1 313 Homeobox Transcription Factor Family AT4G40060 47.463 4.33e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal19g0860 Homeodomain 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0860 K09338 - gmx:100796213 424.091