Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0856 ATGTTAGGTGAAGAAGAGGGTAAGGAGGTTGCCGGAGGTTACCGGAGAGCACATTCCCGGCCAATTTCATGGACTGATAGAGCTCCGGTGAGCCGAAAGCCGCGGAACAGGCCAAGGTCATTGCTGCTACCATTGCAGCCTCTTTCTATTAATAAACGGTGTGTTGGGGAATGGCCAAGTGCTGGATCTGATGACCTTGGAATTTGGCCACTTCCACAGACTCCAAGAGGGTCAATTAGACTCACTGAACCAGGTTCTATGAAGGAGTTTCAGTTCAAAAGGGAAAAGCTGGCTTTCTATGACAAAGAGTGTTCCAGAATTGCTGATCATGTGTACCTTGGGAGTGACACAGTTGCAAAGAACAATGAGCTTTTGAGGCAGAATGGGATCACTCATGTTCTTAACTGTGTTGGTTTTGTTTGCCCTGAATATTTCAAGGGTGATTTTGTGTACAAAACTCTTTGGTTGCAGGATAGTCCAAGTGAGGACATCACAAGTATTCTCTATGATGTTTTTGATTACTTTGAGGATGTTAGGGAGCAAGGTGGGCGTGTCCTTGTTCATTGCTGCCAAGGCGTTTCGAGATCGACATCGCTCGTCATTGCATATCTCATGTGGAGGGACGGTCGGAGCTTTGAAGATGCTTTTCACTATGTGAAGAATGCAAGAGGTGTCACAAATCCAAACATGGGTTTTGCTTGTCAATTGCTTCAATGTCAGAAAAGAGTACATGCTATGCCTGCTAGTCCTAATTCGATTCGTAGGATATATAGAATGGCTCCTCATTCACCTTATGACCCTCTTCATTTGGTTCCCAAAATGGAAAACCAGCCATGTGCACAAGTACTTGATTCTCGTGGCGCTTTTATTATCCTTGTTCCTTCTGCTATATATGTCTGGACTGGTAAGAATTGCAACTATGTCATGTCTTCTAATGCAAAATCAGCAGCTGATCAGGTAATACGTTATGAGAAGGCGAAAGGTCCAGTTCTTATAGTCCATGAGGACGAGGAGCCACCGGATTTTTGGACTGCTCTTTCCGATGAGCAATTGTTATCAGATGCTTCTGATAAGGCAGAGGTCAAGAAGGATGCAGCATTGCCTTCGAACGGGAGAATTAAGATCGATAATGTGGCTGATAAGCGGATTCCTTCGAGGAAAGTCAATGAATATGATTTGGATTTTGAGATTTTCCACAAGGCACTTGCTGGTGGTGTTGTTCCGCCTTTTTCTGTAGCTAATGCTGAATCGGAAACACGCCTTCCTGCTCGAGAAAACAGTTGGTTGAGGCTAAGGAGGAAGCTTGCTAGCGGTATCATCAAAGGATTGCTCAAACCCTGCAAAAACACAAACTCATCCAAAGATGAAACATGTGTGGTCAAGGAAAAAGAAGAAAAACAACACCCTATTGTTGATCCTTCAGCACCATCATCACACCATCCATCTAGTTCACCCGATTCGTTAGAATGTTTTCCAGATAACAGCTCAAACAGGGCAAAAGATACACTTAAAGTCATGGACCAATTGGTTCCTAGTGTTGATTCATCGCGGCCACCGTCTCCTGGAGGAAAATCAAATTCATTTTCTTATATTGTAAGCAACATTCCAAAACTCAGTTCCAAGTCGCCAAAGCTTTCACCTTCTAGTTCTGCTTATGATAGACCATTTACATTTTCTGCTTCATCAACAAACTGA 1695 0.4354 MLGEEEGKEVAGGYRRAHSRPISWTDRAPVSRKPRNRPRSLLLPLQPLSINKRCVGEWPSAGSDDLGIWPLPQTPRGSIRLTEPGSMKEFQFKREKLAFYDKECSRIADHVYLGSDTVAKNNELLRQNGITHVLNCVGFVCPEYFKGDFVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTSLVIAYLMWRDGRSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSIRRIYRMAPHSPYDPLHLVPKMENQPCAQVLDSRGAFIILVPSAIYVWTGKNCNYVMSSNAKSAADQVIRYEKAKGPVLIVHEDEEPPDFWTALSDEQLLSDASDKAEVKKDAALPSNGRIKIDNVADKRIPSRKVNEYDLDFEIFHKALAGGVVPPFSVANAESETRLPARENSWLRLRRKLASGIIKGLLKPCKNTNSSKDETCVVKEKEEKQHPIVDPSAPSSHHPSSSPDSLECFPDNSSNRAKDTLKVMDQLVPSVDSSRPPSPGGKSNSFSYIVSNIPKLSSKSPKLSPSSSAYDRPFTFSASSTN 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0856 564 SMART dsp_5 103 242 IPR020422 GO:0006470|GO:0008138
Lal19g0856 564 MobiDBLite consensus disorder prediction 1 15 - -
Lal19g0856 564 Pfam Dual specificity phosphatase, catalytic domain 111 241 IPR000340 GO:0008138|GO:0016311
Lal19g0856 564 CDD DSP 104 238 - -
Lal19g0856 564 MobiDBLite consensus disorder prediction 1 38 - -
Lal19g0856 564 SMART VILL_6 258 349 IPR007122 GO:0051015
Lal19g0856 564 MobiDBLite consensus disorder prediction 455 470 - -
Lal19g0856 564 ProSiteProfiles Dual specificity protein phosphatase domain profile. 103 245 IPR020422 GO:0006470|GO:0008138
Lal19g0856 564 MobiDBLite consensus disorder prediction 451 564 - -
Lal19g0856 564 ProSitePatterns Tyrosine specific protein phosphatases active site. 187 197 IPR016130 GO:0016311|GO:0016791
Lal19g0856 564 Gene3D Protein tyrosine phosphatase superfamily 79 245 IPR029021 -
Lal19g0856 564 MobiDBLite consensus disorder prediction 513 564 - -
Lal19g0856 564 PANTHER MKPA PROTEIN 33 530 - -
Lal19g0856 564 MobiDBLite consensus disorder prediction 476 502 - -
Lal19g0856 564 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 95 245 IPR029021 -
Lal19g0856 564 SUPERFAMILY Actin depolymerizing proteins 249 348 - -
Lal19g0856 564 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 162 223 IPR000387 GO:0016311|GO:0016791
Lal19g0856 564 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 33 530 - -
Lal19g0856 564 Gene3D Severin 269 352 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0856 Lal-Chr19 12620195 12621889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0856 36 139 Protein tyrosine phosphatase (PTP) family AT3G55270 48.696 3.41e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0856 - - gmx:100775448 692.189