Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0836 ATGCAAGGCCAACTTGTGTGTAGTGGCTGTAGGAGCAATTTGCTTTACCCTAGAGGAGCACCCAATGTTTGTTGTGCATTGTGCAATACAATTACCTCTGTTCCTCCACCTGGAATGGAAATTTCTCAACTTTACTGTGGAGGCTGTAGGACATTACTAATGTACCCATGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACCGTAAACCTTGCACCGGCGTCTAACCATGTCGCCCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCCTCTGTCAAATGTGCAATCTGTCACTATATTACTAATGTCAGTATGATCAATGGAGCGTTTCCAATTCCCGTGCATAGTCCTAATGGGATGACCAACTCCGCAACAATACCTTCTACTTCAACTTCAATGCCTCAATCTCAGAGTCAAACCGTCGTCGTAGAAAATCCGATGTCTGTTGATTCAAATGGGAAATTGGTGAGCAATGTTGTTGTTGGGGTTACAACAGATAAAAGATAA 531 0.4444 MQGQLVCSGCRSNLLYPRGAPNVCCALCNTITSVPPPGMEISQLYCGGCRTLLMYPCGATSVRCSCCHTVNLAPASNHVAHVHCGNCRTTLMYPYGAPSVKCAICHYITNVSMINGAFPIPVHSPNGMTNSATIPSTSTSMPQSQSQTVVVENPMSVDSNGKLVSNVVVGVTTDKR 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0836 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Lal19g0836 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lal19g0836 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lal19g0836 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Lal19g0836 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Lal19g0836 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Lal19g0836 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Lal19g0836 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0836 Lal-Chr19 12435734 12439817 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lal19g0836 zf-LSD1 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0836 - - gmx:100776394 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0836 19 12435734 12439817 Lal19g0836 19 12435734 12439817 ECH
Lal14g1272 14 14467230 14471167 Lal19g0836 19 12435734 12439817 LSH