Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0835 GGCTTATCCATCAATTTGCAAAGAATGAAACAGTTAAAATTGGCTGCACAGGATTCTGAAGCCAAAGAGGGTAATCCTTCTAGGCAGATACCAAAAACAGAAGATGTAGTCGACCCTCCGATCAGTCCGCGGAAGATATCGGCCAGATGGGATCCAGCTGAAGCATGCCGGCCTATGATCGATGAAGCTCCTGTCTTTTATCCAACAATTGAGGAGTTTGAAGATGCCCTTGGGTACATAGCGAAGATACGTCCCGAAGCTGAACCCTATGGAATATGCAGGATCATCCCTCCAGATTGCTGGGTCCCACCGTGCCCGCTCAAGGAGAAAAATTTATGGGAAAATGTTAAGTTTCCTACCCGAGTTCAACAGGTTGACCTGCTTCAGAACAGGGAACCATTTACAAAGAAAAGGAGGGGTAGGAAAAGAAAGCATAAAAAGCTCTCGGAAATAGGTACATATAGGGGTACTGCACCATCAGGTTCTGACTCAGTTCAGAGGTTTGGTTTCAAATCTGGGTCAGAATTCACGCTACATACGTTTCAGCAATACGCTAACAAATTCAAAGCTTGCTACTTTGGGTTGAATGATGGAAACGTTAGTGATAATGATCCCCAGAAGAGACGGGAGCCCTCTGTGGATGAAATTGAAGGCGAGTACTGGCGAATAATAGAGCAACCGACTGATGAAGTGGAGGTATATTATGGTGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTCCCTAAGAAATCGACCTTAACAAAGAGCGACTCAGATCAGTATGCTCTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCCGCTTTAAGTTTCGAAGAATGTGATATCTCTGGAGTTGTTGTTCCATGGCTGTATGTTGGAATGTGCTTTTCATCATTTTGCTGGCATGTCGAGGATCATCACCTCTATTCACTAAATTATGTGCATTGGGGTGACCCTAAAGTATGGTATGGAGTACCTGAAAGGCATGCTGAAGGTTTGGAAGCTGCAATGAAGAAGCACTTGCCTAGATTGTTTAAAGAACAACCAAGTCTACTCAATGAACTGGTAACTCAGTTTTCTCCGTCGATTCTTAAATCTGAGGGGGTGCCAGTATATCGCACTGTCCAGCATTCTGGGGAATTTGTTCTTACCTTTCCAAGGGCATACCACTCTGGTTTCAATAGTGGCTTCAACTGTGCTGAGGCTGTGAATGTAGCTCCTGTTGATTGGTTTGTGCATGGCCAAAACGCTGTCGAGCTTTACAGTTTGCAGCACCGCAAGACATCAGTGTCACATGACAAGTTGTTATTTGGATCAGCTCAGGAAGCTGCGGAGTCCCTAGCCGAGGTAACTCTTCATGGAAAGGAAAATATAAAAAAATCGAAATGGAGAAGTGCTTGTGGGAAAGGTGGAATTCTTACCGAGGCAGTTAAGGCAAGGATAACTTTAGAAACGGAGAGGCTAGAATGTCTTCCGGATTATTTGAAGAAGTTGAAGATGGATGATGATTTTGATATTGTTGACGAAAAAGAATGCTTATCTTGCTTCTACGATTTATATCTATATGCTATAGGTTGCGAGTGCTCTCCTGACATATATTCTTGTCTCCGACACTCAAATTCGTCTTGCTGTTGTGATATGGACAAAAGATATGTTCTGTTTCGTTATACTGCAAATGAGCTAACTACATTGGTTGAAGCGTTAGAAGGAGAGCCACGTGCTATTGAGGCGTGGTCAAAGAGAAACTCTGCAGTGGTTTCTGCTAATGCAGGAGGAGACGCTTTCATGGTTGAACCAGATATGGAGAGTGCCATGCACAAAACTAAGAGTTGTGAAGAAGAGAAAAACTCAACTTGTGAAGAAACCAAGGAGAAGTCAAATTCAAATGTATCAAGCAGTCCTCATAGTAATGTTTCTTCAGAGTTAGTCCATTCACGGCCTCACCGTGAAACTTCTGGTGGACCATGTGGCACCGAAGACCCACATAATTACAAAGTTAATGATAAAAAGTTGGTCACGGACGACAAAGTTATGGTGGAGAAGGCAGACTCTATGGATTTGAACATTGATGTTAAATATGATGAACATGTTCAAAATTTCAGTACATTTGATGGTTATAAATTGTTTGGGGTGGATCTGCAAATGGGTTCAGAGTCAGGAGAGCAACCCAAAATGTTGAAAACAGGAGTTGTAGATTCCTCTAATGCAATTATATTTTCGACAGACCAGAGCTCACGAATCCAAAACTTCGGCAGTTTTGTCGAGCCTATAAGTTTTGGCACTGTGTTGTATGGAAAGTTGTGGAGCACTGATCATGCAATATATCCGAAAGGATTCAAGAGTCGTGTGAAGTTCTATAGCATTCTAGATCCATCAAGAATCTGTAACTATATTTCTGAAGTCTCTGATGCTGGATTTCTTGGGCCTGTTTTCAAGGTTACCATGGAGGAACATCCAAGTGAGACTTTCACAAGCACTTACCCAGATAAGTGCTGGAAAACAGTTCTTGAGAGAGTAAATCATGAAATCGTGAATCGAAAAAGTCTCGGGGAAACAAAACTACCTGCCTTGGAGCATCTAAAAAGACTTGATGGTCATGAAATGTTTGGTTTTCTTACACCATCCATTGTTCAGGCCATCGAATTTCAAGATCCGCATCAACTATGCGTAAATTATTGGAGAAATAAAGAAGTTGGCAGAATATTTTCCGGGAGCGCCAATGGGGATAAGTTAACTTATAGCTTAAGTAATGAAGCAGGCGATGCCAAGAGACTCGAGGCCAAACTTTTTGGTGTTAATTTGATGCAGCAGGAGCAAGATAAGAAAGGAGGCAGTTCTCCATCATTTGAAGAGATGAAACCCAATCTTGAAGGATTATTAAAGAAGGCGAGCGCTGATGAGTTAATTGCCATGCATAATTTATTCAGCTCCGAAGAACAACTCTCTAGGTCGAGAGTAGCATTTGCAGCGCTGATCGAGGAGATTGAGAAATGCAAAGAAGAATAA 3021 0.4244 GLSINLQRMKQLKLAAQDSEAKEGNPSRQIPKTEDVVDPPISPRKISARWDPAEACRPMIDEAPVFYPTIEEFEDALGYIAKIRPEAEPYGICRIIPPDCWVPPCPLKEKNLWENVKFPTRVQQVDLLQNREPFTKKRRGRKRKHKKLSEIGTYRGTAPSGSDSVQRFGFKSGSEFTLHTFQQYANKFKACYFGLNDGNVSDNDPQKRREPSVDEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKKSTLTKSDSDQYALSGWNLNNFPRLPGSALSFEECDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYVHWGDPKVWYGVPERHAEGLEAAMKKHLPRLFKEQPSLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWFVHGQNAVELYSLQHRKTSVSHDKLLFGSAQEAAESLAEVTLHGKENIKKSKWRSACGKGGILTEAVKARITLETERLECLPDYLKKLKMDDDFDIVDEKECLSCFYDLYLYAIGCECSPDIYSCLRHSNSSCCCDMDKRYVLFRYTANELTTLVEALEGEPRAIEAWSKRNSAVVSANAGGDAFMVEPDMESAMHKTKSCEEEKNSTCEETKEKSNSNVSSSPHSNVSSELVHSRPHRETSGGPCGTEDPHNYKVNDKKLVTDDKVMVEKADSMDLNIDVKYDEHVQNFSTFDGYKLFGVDLQMGSESGEQPKMLKTGVVDSSNAIIFSTDQSSRIQNFGSFVEPISFGTVLYGKLWSTDHAIYPKGFKSRVKFYSILDPSRICNYISEVSDAGFLGPVFKVTMEEHPSETFTSTYPDKCWKTVLERVNHEIVNRKSLGETKLPALEHLKRLDGHEMFGFLTPSIVQAIEFQDPHQLCVNYWRNKEVGRIFSGSANGDKLTYSLSNEAGDAKRLEAKLFGVNLMQQEQDKKGGSSPSFEEMKPNLEGLLKKASADELIAMHNLFSSEEQLSRSRVAFAALIEEIEKCKEE 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0835 1006 ProSiteProfiles FYR domain FYRN motif profile. 751 809 IPR003888 GO:0005634
Lal19g0835 1006 Gene3D - 756 895 - -
Lal19g0835 1006 PANTHER LYSINE-SPECIFIC DEMETHYLASE 21 705 - -
Lal19g0835 1006 PANTHER LYSINE-SPECIFIC DEMETHYLASE 707 1003 - -
Lal19g0835 1006 Pfam F/Y-rich N-terminus 762 806 IPR003888 GO:0005634
Lal19g0835 1006 SMART JmjN_1 62 103 IPR003349 -
Lal19g0835 1006 MobiDBLite consensus disorder prediction 610 674 - -
Lal19g0835 1006 MobiDBLite consensus disorder prediction 610 627 - -
Lal19g0835 1006 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 21 705 - -
Lal19g0835 1006 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 707 1003 - -
Lal19g0835 1006 SMART cupin_9 261 427 IPR003347 -
Lal19g0835 1006 Pfam C5HC2 zinc finger 517 568 IPR004198 -
Lal19g0835 1006 Gene3D Cupin 48 411 - -
Lal19g0835 1006 MobiDBLite consensus disorder prediction 628 646 - -
Lal19g0835 1006 MobiDBLite consensus disorder prediction 15 44 - -
Lal19g0835 1006 SMART fyrc_3 815 904 IPR003889 GO:0005634
Lal19g0835 1006 ProSiteProfiles FYR domain FYRC motif profile. 811 901 IPR003889 GO:0005634
Lal19g0835 1006 SUPERFAMILY Clavaminate synthase-like 264 450 - -
Lal19g0835 1006 SMART fyrn_3 765 809 IPR003888 GO:0005634
Lal19g0835 1006 Pfam F/Y rich C-terminus 813 900 IPR003889 GO:0005634
Lal19g0835 1006 ProSiteProfiles JmjC domain profile. 261 427 IPR003347 -
Lal19g0835 1006 Pfam JmjC domain, hydroxylase 294 410 IPR003347 -
Lal19g0835 1006 Pfam jmjN domain 64 97 IPR003349 -
Lal19g0835 1006 ProSiteProfiles JmjN domain profile. 63 104 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0835 Lal-Chr19 12415900 12421289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0835 71 1001 JUMONJI Transcription Factor Family AT4G20400 45.588 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal19g0835 JmjC 8e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0835 - - gmx:100784581 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0835 19 12415900 12421289 Lal19g0835 19 12415900 12421289 ECH