Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0829 ATGTCAAAGATTCGATTCTTAGAAGCGACATTTGTTGAAAGGGACAATACTCCACTTTGGCGTCATGGGCCAAAGGACAAGCCAATACTGTGCAATGCTTGTGGAACAAGATACAAGCTAAAGGGAACCTTGGAGAACTATCTCCCCAGGCATTGCAGGCAAGAGCAACCCAACAACGATCTCAATGAAGTGAAGGGCAAAAGAAAACTCATCGGTAATGGAGATACTAGTGATTTATTGAAATTTGAGATACCATCAAGAAAACGGTCAAGGAAGATGACGCCAATGGAGATGTTTCAAAAACAGCTTCTCCTTTTGTGGGAAAGTGATAAAAGACAAAATGAGTCATCTCAGGAAGAGGTTTTGTTGCCCAAAAATGTAAACAATTTCATACCAAGCAATGAAATAGGCCTTGGAGCCATGCTTCTCAAACAAGATTATGGTACTTCAACTTAG 456 0.4057 MSKIRFLEATFVERDNTPLWRHGPKDKPILCNACGTRYKLKGTLENYLPRHCRQEQPNNDLNEVKGKRKLIGNGDTSDLLKFEIPSRKRSRKMTPMEMFQKQLLLLWESDKRQNESSQEEVLLPKNVNNFIPSNEIGLGAMLLKQDYGTST 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0829 151 CDD ZnF_GATA 16 55 IPR000679 GO:0006355|GO:0043565
Lal19g0829 151 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 47 - -
Lal19g0829 151 ProSiteProfiles GATA-type zinc finger domain profile. 16 42 IPR000679 GO:0006355|GO:0043565
Lal19g0829 151 Pfam GATA zinc finger 15 43 IPR000679 GO:0006355|GO:0043565
Lal19g0829 151 PANTHER GATA ZINC FINGER PROTEIN 16 147 - -
Lal19g0829 151 SMART GATA_3 3 58 IPR000679 GO:0006355|GO:0043565
Lal19g0829 151 PANTHER OSJNBB0038F03.10 PROTEIN 16 147 IPR044589 -
Lal19g0829 151 Gene3D - 13 70 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0829 Lal-Chr19 12361081 12361828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0829 16 60 C2C2-Gata Transcription Factor Family AT4G17570 62.222 6.86e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal19g0829 GATA 1.4e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0829 - - ccaj:109803880 130.954