Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0812 ATGGGTAATTGCTTGTGTAGGTTGGAATCACCAGATTATAGAGTTTCACTCAATGCAAAATCAGAGCAAAACCAGGCAACCAAACAAAGGAATGATGATAGTAAGTTACCATCTAATCCTGAAGAAGTAGAAGTTCTACGCCGCGATTCAGCCGTGAATCCACTGGTTGCATTCACTTATGATGAGCTAAAGATAATCACTGGAAATTTTAGGTCAAGTAGTGTGTTAGGAGGAGGTGGATTTGGAAGGGTTTATAAAGGCTTTATTTCTGAGGGGTTAAGGCATGGGCTTCCTCCTCTGGCTGTAGCTGTTAAGGTTCATGATGGTGACAATAGTCATCAAGGACACAGAGAATGGCTGGCTGAAGTTATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTGAAATTAATTGGATACTGCTGTGAAGATGAACACAGGGTACTAATATATGAGTTTATGGCTCGGGGAAGTGTGGAAATCAATTTGTTCACCAAAGTAGTGATTCCCTTGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAGAAACCTGTTATCTACCGTGATTTCAAGACATCCAATATTTTATTGGACTTGGACTATAATGCAAAACTTTCTGACTTTGGCCTTGCTAAAGATGGACCAGTTGGAGACAATTCCCATGTTTCCACTCGCATAATGGGAACATTTGGTTATGCTGCCCCTGAATACATAATGACAGGTCATCTGACCCCGAGAAGTGATGTTTACAGTTTTGGTGTAGTTCTTCTTGAACTTCTAAGTGGAAGAAAATCCTTAGACAAGTTGAGACCAGCTAGAGAGCAGAACCTTACAGATTGGGCACTTCCTTTGCTGAAGGAAAAGAAGAAATTACTAAAAATTATAGATCCAAAGCTAGAAGGTGATTATCCAATAAAAAGTGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACAGAAACCCAAAAGCAAGGCCTCTAATGAGAGATATAGTAGCTTCATTGGAGCCTTTGCAGCAGGCACACAATGAGGTCCCTATTGAAAAAACACTAACCATAATCAATGAGGTTCCTGAAGCAGATTTAAGTAAGAAAAATGCAGAATGA 1146 0.4014 MGNCLCRLESPDYRVSLNAKSEQNQATKQRNDDSKLPSNPEEVEVLRRDSAVNPLVAFTYDELKIITGNFRSSSVLGGGGFGRVYKGFISEGLRHGLPPLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEFMARGSVEINLFTKVVIPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDLDYNAKLSDFGLAKDGPVGDNSHVSTRIMGTFGYAAPEYIMTGHLTPRSDVYSFGVVLLELLSGRKSLDKLRPAREQNLTDWALPLLKEKKKLLKIIDPKLEGDYPIKSVHKAAMLAYHCLNRNPKARPLMRDIVASLEPLQQAHNEVPIEKTLTIINEVPEADLSKKNAE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0812 381 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Lal19g0812 381 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Lal19g0812 381 Gene3D Phosphorylase Kinase; domain 1 30 153 - -
Lal19g0812 381 ProSiteProfiles Protein kinase domain profile. 70 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g0812 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Lal19g0812 381 MobiDBLite consensus disorder prediction 19 41 - -
Lal19g0812 381 Gene3D Transferase(Phosphotransferase) domain 1 154 369 - -
Lal19g0812 381 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 11 362 - -
Lal19g0812 381 PANTHER OS01G0588500 PROTEIN-RELATED 11 362 - -
Lal19g0812 381 SUPERFAMILY Protein kinase-like (PK-like) 44 348 IPR011009 -
Lal19g0812 381 MobiDBLite consensus disorder prediction 26 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0812 Lal-Chr19 12179296 12185366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0812 23 348 Glycoside Hydrolase AT3G07070 48.214 3.01e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal19g0812 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0812 - - gmx:100775722 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1249 14 14300277 14306552 Lal19g0812 19 12179296 12185366 LSH