Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0787 ATGAATGTGAGTCGGCAAACACAAATATTGGTTAATAGATTTATTACTACTATGCCTCGCAAAGTATATGCTGGACCTGATTACGATGATTACGATGACTACGATGATTATGATGACTATGACGATTATGATGATGAAATCCAAGGCAATGGAGAGGGTCCTGATACAAAGCAAGAGACCATTAGGCCAGGGCTTTGGTCATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACATCATGCGATATTTGTGGTGTTGTACGTCATCCATTGGCTGACACTGGAACTTTCAACAGTAATAAAACAGTTGAAGGAATAAGCACAACTTCTGGGGTATCCGAGTTGGCCAGGTCTCTATTTGCATCATTACCACAACAGGTGCCCAAAGAGGTTGTATTATTTCCAAAGCAGGGTGATGTTTTACAGATTGATGGCAGTAACTACTACATGCTTTGGAATGCCCAAGGAGAATTTTGTGAATTTCATAAGGCTTTTAATGCTCAAAGTCGTCCCCATTTAAACATAGCTCCTTTCAAGTTTGATGTCCCATCCCCTGATGATAAGGTTTATACCGGCCTACAGTCTTCCAAAATGGGTTTGAAAGACAAAGTTACTAATTCTAAAACTTCTCGGGTTTCCTCAAATATCAAAGAGAAGAATGAACTTACTGTACCGTCAAATGTTGAAAGTTTAAAGAACTTATCATCCTTAATGCAGAAGGGCATGTGGGATAGTTCGGCTGAGAACAAGCATTCCAAAAATATGGCAAATGATGTGGAAACAAGTGGTAACACATCAAACAGCTTATCAGCATCTTTGGCAAAAGGCAAAGGTAACAATGTGAAGAAAATCAATTCTTCCAAAAATGGTACAGTTGATACCCAATCAAGCAAAGAAAAGTCAGGTAGTTCATCTGCACTGCCAAAAATCAGAGATAATGATGAGATTAGTTCCTCTTCTATCAAAGATGGAAAAATAGAAAGTCTTTCCAGCAGTTTTAACAACAAGGTTCTCGATGTTAGATCTGGAAATTCAGATAATACTAATGCTAAAGGAGCCCGCCCACAAGTTTCTTATAAACCAGAAAAATGGATGCTCTCTCAACAAGCTGATGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGTAAATCAACACTATCTGGTAGGTTACTGCACTTATTGGGACGGATTTCCCAAAAACAAATGCATAAATATGAAAAGGAGTCCAAGTTACAGGGCAAGGGGTCCTTCGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACTATGACAGTGGCGGTTGCTTATTTTGACACCAAGAAATATCATGTTGTAGTGCTCGACTCCCCCGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGCGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCTTCACTTGGCTCATTTGAAGCTGGCATGGATGGTAGTAAAGGACAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGACCAGGTTATAGTTGCTGTTAATAAGATGGACATTGTGGCGTACTCCAAAGCTCGATTTGATTTTATTAGGCAGCAGTTAGGAATGTTTCTCCGCACTTGTGGTTTCAAAGATTCTTCCGTATCATGGGTTCCTATAAGTGCCATGGAAAATCAGAATTTGGTAGCATCTCCTTCTAATGATAATTTCAAAAACTGGTACGCTGGGCCTTATCTGTTAGATGCAATTGACTCAGTCCAACCTCCTACTAGAGAACTCTCAAAACCGCTACTAATGCCAATATGTGATGTCATCAAATCACCTACACTTGGACAGGTGTCTGCTTGTGGAAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTGGTTATGCCTTCAGCTGTCATGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTGACGTTGCAAGGTGTCGATGGAAGTCTTGTAACTGCTGGAGGTGTACTATGCCATCCCGACTTTCCTGTTGCAGTTTCAAAACATTTGGAATTGAAATTGCTTGTCTTGGATGGTGCAAGTCCCATATTGATGGGTTCTCAGTTAGAGTTTCATGTACAACATGTAAAGGAACCTGCTAGAGTTTCAAAAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGCTGTCTCACCGCAAAGCAAAGTGCAGTAATTGAGGTGATTTTGCATGAGCCAGTCTGTGTGCTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATTATTAGGAAGAACAATTGCTGTTGGACTTGTAACAAGAATAATTGAAGAGCAAGAGTAG 2421 0.4089 MNVSRQTQILVNRFITTMPRKVYAGPDYDDYDDYDDYDDYDDYDDEIQGNGEGPDTKQETIRPGLWSCSICTYDNDESMTSCDICGVVRHPLADTGTFNSNKTVEGISTTSGVSELARSLFASLPQQVPKEVVLFPKQGDVLQIDGSNYYMLWNAQGEFCEFHKAFNAQSRPHLNIAPFKFDVPSPDDKVYTGLQSSKMGLKDKVTNSKTSRVSSNIKEKNELTVPSNVESLKNLSSLMQKGMWDSSAENKHSKNMANDVETSGNTSNSLSASLAKGKGNNVKKINSSKNGTVDTQSSKEKSGSSSALPKIRDNDEISSSSIKDGKIESLSSSFNNKVLDVRSGNSDNTNAKGARPQVSYKPEKWMLSQQADDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKESKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDIVAYSKARFDFIRQQLGMFLRTCGFKDSSVSWVPISAMENQNLVASPSNDNFKNWYAGPYLLDAIDSVQPPTRELSKPLLMPICDVIKSPTLGQVSACGKLEAGALRSGSKVLVMPSAVMGTVRSLERDSNACTVARAGDNVAVTLQGVDGSLVTAGGVLCHPDFPVAVSKHLELKLLVLDGASPILMGSQLEFHVQHVKEPARVSKILSVLDPKTGKVTKKSPRCLTAKQSAVIEVILHEPVCVLEFSSCKALGRVSLRLLGRTIAVGLVTRIIEEQE 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0787 806 Gene3D - 59 95 - -
Lal19g0787 806 PANTHER TRANSLATION FACTOR 69 804 - -
Lal19g0787 806 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 699 802 IPR009001 -
Lal19g0787 806 ProSitePatterns Zinc finger RanBP2-type signature. 66 85 IPR001876 -
Lal19g0787 806 SUPERFAMILY Ran binding protein zinc finger-like 64 89 IPR036443 -
Lal19g0787 806 PRINTS GTP-binding elongation factor signature 379 392 IPR000795 GO:0003924|GO:0005525
Lal19g0787 806 PRINTS GTP-binding elongation factor signature 438 446 IPR000795 GO:0003924|GO:0005525
Lal19g0787 806 PRINTS GTP-binding elongation factor signature 458 468 IPR000795 GO:0003924|GO:0005525
Lal19g0787 806 PRINTS GTP-binding elongation factor signature 474 485 IPR000795 GO:0003924|GO:0005525
Lal19g0787 806 PRINTS GTP-binding elongation factor signature 519 528 IPR000795 GO:0003924|GO:0005525
Lal19g0787 806 MobiDBLite consensus disorder prediction 338 358 - -
Lal19g0787 806 PANTHER OS04G0595300 PROTEIN 69 804 - -
Lal19g0787 806 Gene3D Translation factors 696 806 - -
Lal19g0787 806 CDD EF1_alpha 379 598 - -
Lal19g0787 806 MobiDBLite consensus disorder prediction 243 315 - -
Lal19g0787 806 CDD HBS1_C_III 693 801 - -
Lal19g0787 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 620 IPR027417 -
Lal19g0787 806 Gene3D - 364 599 IPR027417 -
Lal19g0787 806 MobiDBLite consensus disorder prediction 243 321 - -
Lal19g0787 806 Pfam Elongation factor Tu C-terminal domain 701 801 IPR004160 -
Lal19g0787 806 Pfam Elongation factor Tu GTP binding domain 378 594 IPR000795 GO:0003924|GO:0005525
Lal19g0787 806 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 375 603 IPR000795 GO:0003924|GO:0005525
Lal19g0787 806 SMART zf_4 64 88 IPR001876 -
Lal19g0787 806 Gene3D Translation factors 603 692 - -
Lal19g0787 806 MobiDBLite consensus disorder prediction 338 355 - -
Lal19g0787 806 ProSiteProfiles Zinc finger RanBP2 type profile. 62 91 IPR001876 -
Lal19g0787 806 SUPERFAMILY Translation proteins 597 692 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0787 Lal-Chr19 12011330 12020853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0787 175 804 Eukaryotic Initiation Factors Gene Family AT5G10630 60.601 0.0 745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1374 5 16418791 16422514 Lal19g0787 19 12011330 12020853 PCT
Lal3g0360 3 2402891 2406552 Lal19g0787 19 12011330 12020853 PCT