Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0780 ATGGCTGAAATTTCAGAAAGAAATGATGTTGTTTTAAACCTAAACAAGGTTTCTTCCAAATCAAAACAAAACTCATCCACCTTCATCTCTCTACCCTTTTTACAAAAGTTGGTAGCTGAGGTGGTTGCAACATATTTCTTAATATTTGCAGGATGTGGTTCAGTGGTAGTAAACAAGAACAATGACAACATTGTAACACTTCCTGGAATTTCAATAGTTTGGGGACTTGTTGTGACAGTGCTTGTTTATTCTGTTGGTCATGTATCTGGTGCACATTTCAATCCTGCTGTCACAATTGCTTTTGCCACAACTAGAAGGTTTCCATGGAAACAGGTACCAGCTTATGTAGTAGCTCAAGTCCTTGGATCAATACTTGGAAGTGGAACTCTAAGACTAATATTTAGTGGCCATGAGAACCAGTTTCCAGGAACACTACCATCTGGGTCTAATCTACAAGCTTTTGTGACTGAATTCATAATCACTTTTTACCTTATGTTTATCATATCTGGGGTTGGCACTGATGATAGAGCGATAGGTGAGATGGGTGGGATTGCAGTGGGATCAACAGTATTGCTGAATGTCATGATTGCAGGGCCAATAACAGGAGCATCAATGAACCCTGCTAGAAGCCTAGGACCTGCACTTATACACAGTGAATACAGAGGAATATGGGTATATTTGGTATCTCCAATTTTAGGAGCTATTTGTGGTGCATGGGTCTACAACATTATTAGGTACACAGATAAACCATTGAGTGAGATCACCAAAAGTGCATCTTTCTTCAAAGGAGCAAGGCCTGAAGGTGACTCTAATTAG 816 0.3971 MAEISERNDVVLNLNKVSSKSKQNSSTFISLPFLQKLVAEVVATYFLIFAGCGSVVVNKNNDNIVTLPGISIVWGLVVTVLVYSVGHVSGAHFNPAVTIAFATTRRFPWKQVPAYVVAQVLGSILGSGTLRLIFSGHENQFPGTLPSGSNLQAFVTEFIITFYLMFIISGVGTDDRAIGEMGGIAVGSTVLLNVMIAGPITGASMNPARSLGPALIHSEYRGIWVYLVSPILGAICGAWVYNIIRYTDKPLSEITKSASFFKGARPEGDSN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0780 271 SUPERFAMILY Aquaporin-like 29 254 IPR023271 -
Lal19g0780 271 TIGRFAM MIP: MIP family channel proteins 39 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Lal19g0780 271 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 PRINTS Major intrinsic protein family signature 187 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 PANTHER AQUAPORIN NIP2-1 7 264 IPR034294 -
Lal19g0780 271 CDD MIP 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 Pfam Major intrinsic protein 30 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0780 271 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 7 264 - -
Lal19g0780 271 Gene3D Glycerol uptake facilitator protein. 2 256 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0780 Lal-Chr19 11954791 11958023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0780 35 266 Major Intrinsic Protein MIP AT5G37810 60.345 2.70e-103 300
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0780 19 11954791 11958023 Lal19g0780 19 11954791 11958023 ECH
Lal14g1227 14 14168460 14172134 Lal19g0780 19 11954791 11958023 LSH
Lal19g0780 19 11954791 11958023 Lal5g1328 5 15962536 15965649 PCT
Lal5g1328 5 15962536 15965649 Lal19g0780 19 11954791 11958023 PCT