Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0779 ATGGATGAAGCTCAGGGCAGTTCGAGTTCCCTGCCGCCTTTCCTGGCGAAGACTTACGAGATGGTCGATGATCCTTCATTGGATTCCATTGTTTCATGGAGTGCCAATAGTAAAAGTTTCATTGTGTGGAATCCCCCGGAATTCGCGAGGGATTTGCTGCCAAAATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTGAATACATATGGTTTTAGAAAAATTGACCCTGAACAATGGGAATTTGCGAATGACTATTTTGTGAGAGGGCAACCACATCATATGAAGAATATCCATAGAAGAAAGCCAGTGCATAGCCACTCTTTACAAAATCTCCAAACACATGTTCCGTTAATGGAATCAGAAAGACAGAGCTTAAAAGATGAGATAGAGAAGCTTAAACATGATAAAGAACTACTTCGTATGGAGTTACGAAGATATGAACATGAGTTACAAACATATGAGATACAATTACATTGCTCAAATGATCATCTGGGAAAATTGGAACAGGCGCAACAAAAGATGGTCTCTTTTGTTTCTGAAGTATTGCAGAAACCTGGGAGTGCCTTAAATCTCTTGTCACTAACAGAATCCGTTGATAGAAAACGAAGAGTGCCAAGAAGTAGCTACTTTAGTGATGAGGCTAGCATGGAAGATGCTGTTGAAACTTCCCGAATCAGAGAAAATGCAGAAAGCATCTCTAGTTTGGCATTAAACACAGAGCGTTTGGATCAACTTGAGTCATCCTTGGTACTTTGGGAGAATGTTGCAAATGTGGTTGGTGATACCTTCGTTCATATTCATTCAAACTTGGATTTTGATGAATCTACAATTTCTGCTGTTAGTCCATCTATATCTAGTGAGAAACTAGATGTTGAAGTTCAGCTTAAGTCTTCCGGAATCGATATGAACTCTGAGCCAGCTGCAGCTGCTGCTCCTGAGTCTGTTGCATCAAAAGAGCACTCTGCAAGAACAACTGCTGTGGCAACTGGTGCTAATGATGTATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCGTCGGAAGCTCAGGAAGTGCAGTCAGAAAGAAAGGATTATGATGGCAGAAAGAATGAAGGAAAGTTTTGGTGGAACACGCGGATCGGAAATAGTCTTCCAGAACAGATTGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1185 0.4101 MDEAQGSSSSLPPFLAKTYEMVDDPSLDSIVSWSANSKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDYFVRGQPHHMKNIHRRKPVHSHSLQNLQTHVPLMESERQSLKDEIEKLKHDKELLRMELRRYEHELQTYEIQLHCSNDHLGKLEQAQQKMVSFVSEVLQKPGSALNLLSLTESVDRKRRVPRSSYFSDEASMEDAVETSRIRENAESISSLALNTERLDQLESSLVLWENVANVVGDTFVHIHSNLDFDESTISAVSPSISSEKLDVEVQLKSSGIDMNSEPAAAAAPESVASKEHSARTTAVATGANDVFWEQFLTENPGSSEAQEVQSERKDYDGRKNEGKFWWNTRIGNSLPEQIGHVGQAEKT 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0779 394 MobiDBLite consensus disorder prediction 346 366 - -
Lal19g0779 394 Coils Coil 111 159 - -
Lal19g0779 394 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0779 394 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0779 394 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0779 394 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0779 394 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Lal19g0779 394 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 370 IPR027725 -
Lal19g0779 394 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0779 394 Gene3D - 6 104 IPR036388 -
Lal19g0779 394 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0779 394 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 370 - -
Lal19g0779 394 SUPERFAMILY Tropomyosin 103 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0779 Lal-Chr19 11935729 11937688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0779 7 394 HSF AT4G18880 52.239 2.34e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal19g0779 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0779 K09419 - gmx:100798004 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0779 19 11935729 11937688 Lal19g0779 19 11935729 11937688 ECH
Lal7g0704 7 13986491 13991099 Lal19g0779 19 11935729 11937688 ECH
Lal14g1226 14 14156139 14158356 Lal19g0779 19 11935729 11937688 LSH
Lal7g0704 7 13986491 13991099 Lal19g0779 19 11935729 11937688 LSH