Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0778 ATGAAGTGGGGTGGTAAAAAACACTCTTCATCTTCACCACCTTCCTCTTATAAATGTTTTTTTATCTCTCATTTTTCATGGCTATCAAAGTTCAAGCATATGAGAATCATTTCAGAGCCAAAACCTTCAAAACTGAAGCAGAATTCTCCATCTAATGGTAGATTCTATGGAGGTGATGATGATGAACCTTTCTGGAGAGTACTCTCATTTAGTGAAGACAAAGAGCATAACAAAACTGAAGAAGATATTATCAAACCATCAACACTGTTGTATAATTTGGAAGATGAGTTGAAGATTGAAAGATTGAATGGTAAAAGAAATAATGGAACAAAAGATAGAAACTTTCCAAATGAAATAGAGGTTATTGATGAGTGTGATAGAGAAAAGAATTTTGGGTATTTGAAAAGGAGGTATGAGAAGAAAGTTCAAAGTGTTTTTGAAGAGAAACTCTTGAAATTGGAAAGAACAAAAGAAGAAAAAGATGAAGAAGGTGAAAAGGGTATGCTGCAAAATGATTCACCTAGAACAATATGTACACCAAGAACACATTTTAGAAGAAGTAGAGAAGCTTATGAGAAGAAACAGTGTGTGGAGTTGAAAGCAAAAGTTAACAAACAAAAGCTATCAGTGAATTTGAGCAAAGAAATTCATAGGAAGAAACCAAAGCCTAGCTTCAAGGTAAGAGTACATTCACCAAGAATAGCTTCTAAGGTTGAAATATGCAAAATCAGGGCTATAGAAGACATGAAGAAAGCAAGACTGAAAATGAAGAAAAAAGAGGAAACTTTGAAGGGAAAATCAAGCCTAGATCATAGCTTTGCTGTGGTGAAATGTTCTTTCGATCCGCGTCGAGATTTTAGAGACTCCATGATTGAGATGATCATGGAGAAAAAGATCAATAAGCCAGAAGAAATGGAAGAGCTTTTGGCATGTTATTTGACTTTGAATTCTAGTGAGTATCATGATCTCATTATCAAAGTGTTCAAGCAAGTTTGGTTGTATATGAACCAAGCTTGTTGGTGTGTTAAATCAAACAAGCAAATGAAGCAATGTTGTTAG 1059 0.3437 MKWGGKKHSSSSPPSSYKCFFISHFSWLSKFKHMRIISEPKPSKLKQNSPSNGRFYGGDDDEPFWRVLSFSEDKEHNKTEEDIIKPSTLLYNLEDELKIERLNGKRNNGTKDRNFPNEIEVIDECDREKNFGYLKRRYEKKVQSVFEEKLLKLERTKEEKDEEGEKGMLQNDSPRTICTPRTHFRRSREAYEKKQCVELKAKVNKQKLSVNLSKEIHRKKPKPSFKVRVHSPRIASKVEICKIRAIEDMKKARLKMKKKEETLKGKSSLDHSFAVVKCSFDPRRDFRDSMIEMIMEKKINKPEEMEELLACYLTLNSSEYHDLIIKVFKQVWLYMNQACWCVKSNKQMKQCC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0778 352 Coils Coil 242 262 - -
Lal19g0778 352 Pfam Transcriptional repressor, ovate 279 334 IPR006458 -
Lal19g0778 352 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 6 347 IPR038933 GO:0045892
Lal19g0778 352 ProSiteProfiles OVATE domain profile. 275 334 IPR006458 -
Lal19g0778 352 MobiDBLite consensus disorder prediction 157 179 - -
Lal19g0778 352 Coils Coil 143 163 - -
Lal19g0778 352 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 274 335 IPR006458 -
Lal19g0778 352 PANTHER TRANSCRIPTION REPRESSOR OFP4 6 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0778 Lal-Chr19 11928435 11929493 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal19g0778 Ovate 7.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0778 - - gmx:100794362 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0778 19 11928435 11929493 Lal19g0778 19 11928435 11929493 ECH
Lal19g0778 19 11928435 11929493 Lal5g1320 5 15859582 15862999 PCT
Lal5g1320 5 15859582 15862999 Lal19g0778 19 11928435 11929493 PCT