Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0731 ATGGATTCGGATTCTCATGGAAACCTCGATGAGCAGATTTCTCATCTCATGCAGTGCAAACCTCTCTCAGAGCAAGAGGTAAGGGCCTTGTGTGATAAGGCAAAGGAAATTTTGATGGAAGAGAGTAATGTGCAGCCTGTGAAAAGCCCTGTTACTATTTGTGGTGATATTCATGGGCAATTCCATGACCTTGCAGAGCTGTTTCGCATTGGAGGGAAGTGTCCAGATACAAATTACTTATTTATGGGAGATTATGTTGACCGTGGGTACTATTCTGTTGAGACCGTAACACTTTTGGTTGCCTTTAAAGTGCGTTATCGCCAGCGTATCACAATTCTGAGAGGAAATCATGAAAGTCGACAGATTACTCAAGTTTATGGGTTTTATGATGAGTGTCTACGGAAGTATGGCAGTGCTAATGTTTGGAAGATCTTCACTGATTTGTTTGATTACTTTCCATTGACAGCATTGGTTGAATCTGAAATATTTTGTCTTCATGGTGGGCTGTCCCCATCTATTGAAACCCTTGATAACATACGTAACTTCGACCGGGTTCAAGAAGTTCCTCACGAGGGGCCCATGTGTGATCTTCTATGGTCTGATCCGGATGACCGTTGTGGTTGGGGCATCTCTCCTAGAGGTGCTGGATATACCTTTGGCCAGGACATATCTGAACAATTTAACCATACCAATAATTTGAAGCTGATTGCAAGAGCTCACCAGCTGGTTATGGAAGGATATAACTGGGGTCATGATCAAAAGGTGGTTACCATATTTAGTGCACCTAATTATTGTTATAGATGTGGGAATATGGCATCTATACTTGAAGTTGATGACTGCAAAGGACACACATTCATTCAGTTTGAACCAGCTCCAAGGAGGGGAGAGCCTGATGTAACAAGAAGAACACCAGATTACTTCCTATGA 927 0.4239 MDSDSHGNLDEQISHLMQCKPLSEQEVRALCDKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVAFKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0731 308 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 3 308 - -
Lal19g0731 308 Gene3D - 2 308 IPR029052 -
Lal19g0731 308 PRINTS Serine/threonine phosphatase family signature 50 77 IPR006186 GO:0016787
Lal19g0731 308 PRINTS Serine/threonine phosphatase family signature 79 106 IPR006186 GO:0016787
Lal19g0731 308 PRINTS Serine/threonine phosphatase family signature 112 136 IPR006186 GO:0016787
Lal19g0731 308 PRINTS Serine/threonine phosphatase family signature 147 173 IPR006186 GO:0016787
Lal19g0731 308 PRINTS Serine/threonine phosphatase family signature 176 203 IPR006186 GO:0016787
Lal19g0731 308 PRINTS Serine/threonine phosphatase family signature 232 252 IPR006186 GO:0016787
Lal19g0731 308 PRINTS Serine/threonine phosphatase family signature 254 270 IPR006186 GO:0016787
Lal19g0731 308 SUPERFAMILY Metallo-dependent phosphatases 8 293 IPR029052 -
Lal19g0731 308 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-5 CATALYTIC SUBUNIT 3 308 - -
Lal19g0731 308 ProSitePatterns Serine/threonine specific protein phosphatases signature. 113 118 IPR006186 GO:0016787
Lal19g0731 308 CDD MPP_PP2A_PP4_PP6 8 292 - -
Lal19g0731 308 Pfam Calcineurin-like phosphoesterase 50 241 IPR004843 GO:0016787
Lal19g0731 308 SMART pp2a_7 22 292 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0731 Lal-Chr19 11313141 11319867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0731 29 238 Calmodulin-binding Proteins AT5G63870 34.127 8.71e-32 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1184 14 13880927 13887505 Lal19g0731 19 11313141 11319867 LSH
Lal7g0668 7 13689869 13697905 Lal19g0731 19 11313141 11319867 LSH