Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0704 ATGGCTGGTGTTTCTCTGAAATGCGGAGACTGTGGAGCTTTGTTGAAATCTGTAGAAGAAGCACAAGAACACGCTGAACTCACTTCTCACTCTAACTTCTCCGAATCCACCGAACCTGTTCTCAATCTCCTTTGCACCGCTTGCTCCAAACCATGCCGATCTAAAACCGAGAGTGATTTGCATACGAAGAGAACTGGGCATACTGAATTTGTTGATAAGACTTCGGAAGCAACAAAACCAATAAGTTTAGAGGTTCCAAAGGTGGGTGCAACCGCAGAAGACTCTGTTACTGCAATCACTAACCAAGATGAAGAAATGGTTGTTCCAGAAGTTGACAAAAAGATACTCGAGGAACTTGAATCAATGGGTTTTTCAGCAGCACGAGCAACACGTGCACTTCATTATTCTGGTAATGCTGGCCTTGAAGCTGCTGTAACTTGGATAGTAGAGCATGAGAATGACCCCGACATAGATCAGATGCCTTTGGTACCTGCCAACACGAAAGTCGAGGCTCCCAAACCTTCTCTTACTCCTGAAGAACTGAAGGCCAAACAACAAGAACTAAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAACGGAGAGAGAAAAAGAGAAGGAGAGAATTCGCATCGGCAAGGAGCTGCTGGAAGCAAAGAGGATTGAAGAAGATAATGAGAGAAAACGTATATTGGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAAACTTGGGTTGCCTCCAGAGGAGCCTTCAGTATCCAAACCTTCACCTGTTGTTGAGGAGAAAAAGAGTTTTCTCCCAGTTAGGCCTGCCACAAAATCTGAGCAAATGAGAGAGTGCTTGCGTTCGCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTGAAGAGAGCATTCCAAACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAGCCCCGATGAGGAAAAATTCAGGAAAATTCGACTTACTAACCAATCTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGTGGAATTGAATTCCTGGAAATTTGCGGGTTTGAGAAGATCGATGGTGGTGAGTTTTTGTTCTTGCCTAGGGACAAGGTTGACATGGCAGTCCTGAATTCAGCCGGGTCGGAACTAGATTCTGCAATAAAGAATCCCTTTTTCGGAGTTCTTTAG 1233 0.4485 MAGVSLKCGDCGALLKSVEEAQEHAELTSHSNFSESTEPVLNLLCTACSKPCRSKTESDLHTKRTGHTEFVDKTSEATKPISLEVPKVGATAEDSVTAITNQDEEMVVPEVDKKILEELESMGFSAARATRALHYSGNAGLEAAVTWIVEHENDPDIDQMPLVPANTKVEAPKPSLTPEELKAKQQELRERARKKKEEEEKRTEREKEKERIRIGKELLEAKRIEEDNERKRILALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLPPEEPSVSKPSPVVEEKKSFLPVRPATKSEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARSPDEEKFRKIRLTNQSFQERVGALKGGIEFLEICGFEKIDGGEFLFLPRDKVDMAVLNSAGSELDSAIKNPFFGVL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0704 410 MobiDBLite consensus disorder prediction 253 301 - -
Lal19g0704 410 Coils Coil 181 213 - -
Lal19g0704 410 MobiDBLite consensus disorder prediction 175 210 - -
Lal19g0704 410 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Lal19g0704 410 CDD PUB_UBA_plant 304 410 - -
Lal19g0704 410 SUPERFAMILY UBA-like 101 164 IPR009060 GO:0005515
Lal19g0704 410 SMART PGNneu 320 383 - -
Lal19g0704 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Lal19g0704 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Lal19g0704 410 SMART uba_6 112 150 IPR015940 -
Lal19g0704 410 Gene3D - 112 158 - -
Lal19g0704 410 SUPERFAMILY PUG domain-like 295 406 IPR036339 -
Lal19g0704 410 Gene3D - 301 400 - -
Lal19g0704 410 MobiDBLite consensus disorder prediction 253 270 - -
Lal19g0704 410 MobiDBLite consensus disorder prediction 168 210 - -
Lal19g0704 410 Pfam UBA/TS-N domain 113 148 IPR015940 -
Lal19g0704 410 Pfam PUB domain 317 387 IPR018997 -
Lal19g0704 410 Coils Coil 224 261 - -
Lal19g0704 410 CDD UBA_PUB_plant 110 158 - -
Lal19g0704 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0704 Lal-Chr19 10712495 10721193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0704 93 410 C2H2 Transcription Factor Family AT1G04850 78.193 6.67e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0704 K24348 - gmx:100794687 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0704 19 10712495 10721193 Lal19g0704 19 10712495 10721193 ECH