Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0687 ATGGACGGAGCGCCGCCATCCTCCTCCTCCGCTGCCGCCGGAACTGGAGGTGGTCCGGCGCCGTTCCTGTTGAAGACCTACGAGATGGTGGACGATTCTTCAACAGACGACGTCGTTTCTTGGAGCTCAACGAACAACAGCTTCGTCGTTTGGAATCCTCCTGAGTTCGCACGCTTTCTTCTTCCAACGTATTTCAAGCATAATAACTTCTCCAGCTTTATTCGCCAGCTTAATACCTATGGTTTTCGAAAAATACATCCCGAGAGATGGGAGTTTGCTAATGATGAATTTATAAAAGATCAAAAGCATCTTCTTAAGAATATTTACCGTAGGAAACCAATCCACAGTCATAGTCATCCTCCAGGTTCTCCGGTGGATCCAGAAAGAGCAGCATTGGAGGAAGAAATAGAGAAACTTTCACGTGAGAAGGCTTCTCTTGAATCCAATATTTTTAGCTTCATACAACACAAGTCAACAGCAAAGGTTCAGTTGGAAGATTTTCATCAGAGATTAGATGGTATGGAGAAGAGGCAGAAAAAATTGTTGAACTTTTTTGAGAAGGCTCTTCAAAATCCTGCATTTGTTGAACAGATTTCCCGCAAAATTGAATCCATGGATTTATCGGCATACAATAAGAAGAGACGATTGCCTCAGGCTGATCACTTGTTTCCAGTTGCTGAAAGTAACTTGGTCGATAATCATAGCAATTTAAGAATGGAATTCGGGAATGTTTTCCATCAAGATTTCTCAGATAAACTCACACTGGAATTGTCACCGTCTGTTTCAGATATGAACCTAGTATCAGGTAGCACAGTAAGTTCGTCTGAAGATAGGGAAAGCCCACAGAAGAAGCAATCTGAAGGAGAAGCAAAAGAAGCGCAGACAAAAACAACTTTTTCATTTGCACCAGAAACATTGGAGCTTGCAGATACTGGGGCTTCTTTTACTTTTAACATGGATTCTTGTTTATCACGAAGAGCAGCGGTTGCCGAGAGCTCAAATCTGCACTCTTTAGAGCCAAGTAGTGAAGAAGGTGATAACCATATATCCTGCCAACTAAATTTAACACTGGCATCTAGCACATTGCAGGTCAATAGAAATTCATTCTCAGCTAGATCACCCCAAATAGACTGCCAAGAAATTGGAAAATTGGCTGAATCGAGATTTTCTGCCAATGGTAAAGAATCTGATAACAGAGTTTCCCCTAACCGAAATCCGATTAATGAGGTTACCAACTTAGCTTCACCACATGAGGCTCCAAGTAACAACCAAGTTACCCCAGCTGCTCCAGAGAGGGTAAATGATGTGTTTTGGGAACAGTTCCTTACTGAAAGACCAGGTTGTTCAGACAATGAAGAGGCAATATCAAACTACAGAGAAAACCCATATGATGAGAAAGACGAAGGCCGGTCGGCTCATGGAATCTCTAGAAACATTCAGGGTATGGATAAACTCACACTTTGA 1464 0.4221 MDGAPPSSSSAAAGTGGGPAPFLLKTYEMVDDSSTDDVVSWSSTNNSFVVWNPPEFARFLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFIKDQKHLLKNIYRRKPIHSHSHPPGSPVDPERAALEEEIEKLSREKASLESNIFSFIQHKSTAKVQLEDFHQRLDGMEKRQKKLLNFFEKALQNPAFVEQISRKIESMDLSAYNKKRRLPQADHLFPVAESNLVDNHSNLRMEFGNVFHQDFSDKLTLELSPSVSDMNLVSGSTVSSSEDRESPQKKQSEGEAKEAQTKTTFSFAPETLELADTGASFTFNMDSCLSRRAAVAESSNLHSLEPSSEEGDNHISCQLNLTLASSTLQVNRNSFSARSPQIDCQEIGKLAESRFSANGKESDNRVSPNRNPINEVTNLASPHEAPSNNQVTPAAPERVNDVFWEQFLTERPGCSDNEEAISNYRENPYDEKDEGRSAHGISRNIQGMDKLTL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0687 487 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 14 481 - -
Lal19g0687 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 481 IPR027725 -
Lal19g0687 487 MobiDBLite consensus disorder prediction 394 427 - -
Lal19g0687 487 MobiDBLite consensus disorder prediction 266 299 - -
Lal19g0687 487 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0687 487 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0687 487 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0687 487 MobiDBLite consensus disorder prediction 457 473 - -
Lal19g0687 487 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0687 487 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0687 487 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal19g0687 487 Gene3D - 17 112 IPR036388 -
Lal19g0687 487 MobiDBLite consensus disorder prediction 277 291 - -
Lal19g0687 487 MobiDBLite consensus disorder prediction 388 427 - -
Lal19g0687 487 MobiDBLite consensus disorder prediction 448 487 - -
Lal19g0687 487 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Lal19g0687 487 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0687 Lal-Chr19 10397887 10401686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0687 1 487 HSF AT4G13980 52.227 1.53e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal19g0687 HSF_DNA-bind 3.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0687 K09419 - gmx:100786408 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0687 19 10397887 10401686 Lal19g0687 19 10397887 10401686 ECH