Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0642 ATGGACGAAGACTTCGAGTTTCCAGCAGCAAACAACATTGAGGATGAGGAAATGGAAATTCCCGAAGATGAAGACACAGTGAGTTCGATGATGAAGGTTGGTGAAGAGAAGGAGATTGGGAAGAATGGTTTGAAGAAGAAGCTGGTTAGGGAAGGTGAAGGATGGGATAACCCTGCTTCTGGAGATGAAGTTGAAGTGCATTATACGGGAACATTGTTGGATGGGACTCAATTTGATTCTAGCCGTGACAGGGGTACTCCTTTTAAGTTCAAGCTTGGACAAGGACAAGTAATTAAGGGATGGGATGAAGGTATCAAAACTATGAAGAAGGGTGAAAATGCCATTTTCACAATACCCCCAGAATTGGCTTATGGTGAGTCTGGCTCTCCTCCCACTATTCCTCCAAATGCAACTCTACAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGAGAAGGATATATGCAAGGATGGAGGAATACTCAAGAAGGTAGTTGCTGAAGGAGAGAAATGGGATAATCCTAAGGACATGGATGAAGTATTTGTTAAGTATGTAGCTCGCCTTGAAGATGGAACAGTCATTTCAAAATCTGATGGGGTGGAGTTTACAGTAGAACAGGGTTATTTCTGTCCTGCAATTTCCAAGGCTGTGAAAACAATGAAGAAGGGAGAGAAAGCTTTATTGACTGTGAAGCCACAATATGCATTTGGTGAGAATGGAAAGCCAGCATCAGGAGATGAAGGTGCTGTACCTCCTAGTGCTTCTCTCCAGATAGAGGTAGAGTTAGTCTCATGGAAGACCGTATCTGATATTACCAAGGATAAGAAGGTTCTCAAGAAGACTTTAAAGGAGGGAGAGGGATATGAACGACCCAATGATGGAGCTGTGGTTCAAGTGAAACTCATTGGAAAGTTGAAAGATGGAACTATTTTCCTTAAGAAGGGTTATGATGATGAACAGCCATTTGAGTTCAAAATTGATGAAGAGCAAGTAATTGATGGACTTGATACAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCATCGGTGATCATACAACCCGAATATGCTTTTGGTCCATCTGGGTCACCTCAAGAATTGGCAACTGTTCCTCCCAATTCCACTCTGTACTATGAAGTTGAGTTGCTTTCCTTTGTAAAGGAAAAGGAATCATGGGATTTGAATACACAGGAGAAGATTGAGGCAGCTGGGAAGAAAAAGGAAGAAGGGAATGTATTATTCAAGGCTGGTAAATATGAAAGAGCATCAAAGAGATATGAAAAGGCCATAAAGTTTATTGAGTATGATTCCTCCTTCAGCGACGAGGAGAAACAAAAGAGCAAGGTGTTGAAAATCACATGCAACCTCAACAACGCTGCGTGTAAGTTGAAACTAAAGAACTACAAAGAGGCAGAGAAGTTGTGTACAAAGGTATTGGAGCTTGATAGTAGGAATGTAAAAGCACTATACCGAAGGGCGCAGGCATATATTCAGCTTGTGGACTTGGATTTGGCTGAGATTGACATTAAGAAAGCCCTTGAGATTGAGCCAGATAACAGGGATGTTAAGATGGAGTACAAGATTTTGAAGGAGAAAGTGAGAGAATACAATAAGAAGGATGCACAATTTTATGGCAGCATATTTGCCAAAATGACCAAAGTAGAACAACCAAAAGCAGCATCAACTAAGCAGGAGTCTGTGCCAATGACTATTGACAGTAAAGCTTAA 1728 0.4138 MDEDFEFPAANNIEDEEMEIPEDEDTVSSMMKVGEEKEIGKNGLKKKLVREGEGWDNPASGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSEKDICKDGGILKKVVAEGEKWDNPKDMDEVFVKYVARLEDGTVISKSDGVEFTVEQGYFCPAISKAVKTMKKGEKALLTVKPQYAFGENGKPASGDEGAVPPSASLQIEVELVSWKTVSDITKDKKVLKKTLKEGEGYERPNDGAVVQVKLIGKLKDGTIFLKKGYDDEQPFEFKIDEEQVIDGLDTAVKNMKKGEIASVIIQPEYAFGPSGSPQELATVPPNSTLYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEKAIKFIEYDSSFSDEEKQKSKVLKITCNLNNAACKLKLKNYKEAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEIDIKKALEIEPDNRDVKMEYKILKEKVREYNKKDAQFYGSIFAKMTKVEQPKAASTKQESVPMTIDSKA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0642 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 386 IPR001179 GO:0003755
Lal19g0642 575 Gene3D Tetratricopeptide repeat domain 389 546 IPR011990 GO:0005515
Lal19g0642 575 MobiDBLite consensus disorder prediction 556 575 - -
Lal19g0642 575 SUPERFAMILY FKBP-like 36 156 - -
Lal19g0642 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 386 561 - -
Lal19g0642 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 278 386 - -
Lal19g0642 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 20 273 - -
Lal19g0642 575 SUPERFAMILY FKBP-like 153 269 - -
Lal19g0642 575 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Lal19g0642 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 288 383 IPR001179 GO:0003755
Lal19g0642 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 146 IPR001179 GO:0003755
Lal19g0642 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 263 IPR001179 GO:0003755
Lal19g0642 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 266 IPR001179 GO:0003755
Lal19g0642 575 Pfam Tetratricopeptide repeat 487 519 IPR019734 GO:0005515
Lal19g0642 575 SUPERFAMILY TPR-like 392 550 IPR011990 GO:0005515
Lal19g0642 575 Gene3D - 154 266 IPR046357 GO:0003755
Lal19g0642 575 Gene3D - 267 388 IPR046357 GO:0003755
Lal19g0642 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 61 149 IPR001179 GO:0003755
Lal19g0642 575 MobiDBLite consensus disorder prediction 557 575 - -
Lal19g0642 575 Gene3D - 32 153 IPR046357 GO:0003755
Lal19g0642 575 Coils Coil 519 539 - -
Lal19g0642 575 SUPERFAMILY FKBP-like 268 403 - -
Lal19g0642 575 PANTHER PEPTIDYLPROLYL ISOMERASE 20 273 - -
Lal19g0642 575 PANTHER PEPTIDYLPROLYL ISOMERASE 278 386 - -
Lal19g0642 575 PANTHER PEPTIDYLPROLYL ISOMERASE 386 561 - -
Lal19g0642 575 SMART tpr_5 486 519 IPR019734 GO:0005515
Lal19g0642 575 SMART tpr_5 403 436 IPR019734 GO:0005515
Lal19g0642 575 SMART tpr_5 452 485 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0642 Lal-Chr19 9268560 9272770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0642 23 575 Calmodulin-binding Proteins AT5G48570 73.381 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0642 K09571 - gmx:100819747 993.801