Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0612 ATGGATTGGAATGCAAAATCTCCGTCACAGTGGGATTGGGAGCAATCGCTCTTCCTCAATGCAAAAGCAACTGAAATTTCCAAATCACAGCCAAACTGGAACGGTGAAACAAACCAAGAAATCAATGTTGGGTTGATGGATACATCTGGTGGCAGTGGTTGTTCTGTGTCTGAGCTAATACATGCTTCTTCATCAAGGAGCTCAATATCAGCTTCGAACAATTCATCGTCAAATAGGGATAGCAAAACATCTATGTACACTCTTGAAAGTTCCTTTGATGATTCCAGTGGTAAAAAAGACTTGTCTAAAGTTGAAATTCCTCATGCACTAGAGCCCTCTTCTGTCTCGGGTGAACCACTGCTCTCTCTGAAACTCGGTAAGCGGCTGTACTTTGAGGATGTTTACCCAGGAAGTAATTCGAAGAGCCCATCTTTGTCTGAGGCTCCTCTGTCATCTTTGAGTACTGGTAAAAAAGGCAAGTCCAATGGTCAGAATGTACAACTTACACGCTGCCAGGTTGAAGGCTGTGCCCTTGATCTCTCGTCGGCTAAAGATTACCATCGAAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTAGTTATAGCTGGTATGGAACGTCGATTTTGCCAGCAATGCAGCAGGTTTCATGATCTGTCAGAGTTTGATGAGAAAAAGAGAAGCTGCAGGCGACGTCTTACAGATCACAATGCAAGGCGCCGTAAACCTAATCCTGTAGCTGTTCGATTAAATCAACCAGCTTTGTCTCCTTCACTCTATGTCACACTGCAATTGCGGTGTGATGCAGTTGCAGCAATCACCGCAGCCGCAATATTGCGGCCGCATCAGACTAAGAAGGATGCTGCTATTACATATGGGAGGCAACATATGAGTCCATTCGCTTATTCAAGGACTGCTACAAATTTAGTCTGGCAAAACCAACACAGCAGCAAGCTCCCTCAGGCAAAAGATTTTCTCTTGAATCCTGCAAAAGCCAATAATGAGATGCCGAGTATTGGCACTACGGTTTCTTGTGATTTCAAATCCCCTTTTATATCCAACGACATTGCATCGAGGAGTGTTAATCCAGGCATAGAAGACTCAATTACCTCATCTGATCTTAATGTTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACTAATTCCTGGGGTTCACATGAGCCCAAGTCCATTTCTGTCGAACACCCGAACAAAGCAACAACAACAGCACATGCTATGAGTCAGCGTGTACCCCTTGCTTCGCCAGAATATTGGCACATTGGTCAACAACCAGTGAATTCCGGAATGTGGGTCTCCTACTCGAATTGTGATGATAGCAATCGCTTTCAGGAATTTCAACTGTTCAGAGAACCTTACGAGTCCGGTTTTCCTTACAACCAGTTGGATTAA 1422 0.4402 MDWNAKSPSQWDWEQSLFLNAKATEISKSQPNWNGETNQEINVGLMDTSGGSGCSVSELIHASSSRSSISASNNSSSNRDSKTSMYTLESSFDDSSGKKDLSKVEIPHALEPSSVSGEPLLSLKLGKRLYFEDVYPGSNSKSPSLSEAPLSSLSTGKKGKSNGQNVQLTRCQVEGCALDLSSAKDYHRKHRVCESHSKSPKVVIAGMERRFCQQCSRFHDLSEFDEKKRSCRRRLTDHNARRRKPNPVAVRLNQPALSPSLYVTLQLRCDAVAAITAAAILRPHQTKKDAAITYGRQHMSPFAYSRTATNLVWQNQHSSKLPQAKDFLLNPAKANNEMPSIGTTVSCDFKSPFISNDIASRSVNPGIEDSITSSDLNVTQDFHRALSLLSTNSWGSHEPKSISVEHPNKATTTAHAMSQRVPLASPEYWHIGQQPVNSGMWVSYSNCDDSNRFQEFQLFREPYESGFPYNQLD 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0612 473 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Lal19g0612 473 Pfam SBP domain 171 244 IPR004333 GO:0003677
Lal19g0612 473 MobiDBLite consensus disorder prediction 65 100 - -
Lal19g0612 473 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 23 472 - -
Lal19g0612 473 MobiDBLite consensus disorder prediction 137 164 - -
Lal19g0612 473 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 472 IPR044817 GO:0003677
Lal19g0612 473 MobiDBLite consensus disorder prediction 65 92 - -
Lal19g0612 473 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Lal19g0612 473 SUPERFAMILY SBT domain 169 247 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0612 Lal-Chr19 8914886 8920588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0612 1 393 SBP-box Gene Family AT1G27360 38.537 7.86e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal19g0612 SBP 1.6e-31 No_clan