Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0573 ATGGATGTTGCTGATGTTGAAGAGAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCGCTTTCAGTAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCCGGAATTCAGGCATTATGTTCATTGCATGTAGCCCTAGAGAAGGCCAAGAATGTTCTTCTGCACTGCTCAGATTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGTTAAATGTGCTCTTGAAGATGGTCTTAAACGCGTGGAAGATATTGTTCCACAATCTATTGGATTTCAGATTCAGGATATTTTGGATGAACTTGTGAGTGTGGTATTTGCACTTGACACATCGGAGAAGCAAGTTGGCGATGATTTAATTGCAATGCTTCAACAGGAGAGAAAGTTCAACTGTTGTAATGACAGTAATGAGCTCGAATCATTTCACCAGGCCACCATTAGACTTGGAATTACATCTTTCAGAGCAGCTCTTACTGAAAGAAGGGCCCTCAAGAAACTCATAGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATCGTTGCATATCTTCTATATCTTATGAGGAAATACTCGAAGTTATTTAGAAGTGAGGTCTTGGATGACAATGACTCTCAGGGTTCTGGACCTTGTTCTCCAATTGGTCAGGGATCTATTGAGAATGGTGTTTCTGTTGGTCATTATCAGGCCTTTGACAGACAGGTTTCAAAACTTAGCTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGTCAGATGCCTGTTCCACCTGAAGAGCTAAGGTGTCCAATATCTTTGCAACTTATGTATGATCCTGTTATCATTGGTTCTGGGCAAACATTTGAAAGGGTTTGCATCGAGAAATGGTTCAGTGATGGGCACAATACCTGCCCAAAGACCCAACATCAACTTTCACATCTTTGTTTAACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGCGTCCCTATTCCTAAAAGTCCTCCTGAATCCCTTGATATTAACTACTGGAGATTGGCATTATCAGAGTCTGAATCTACAAATTCAAGATCTGTAAACAGTGTCAGCGCTTGCAAATCAAAAGGTGTCAAAGTAGTTCCTTTAGAAGAGAATGGTATCTTAGAGGAATTAGAGCAAAATGGAACTGAAAGTTTGTCTACAAAAGAGGAAGATGCTGACCAGTATTTACATTTTCTGAAAGTTTTGACTGAGGGGAACAATTGGAAGTGGAAATGTGAAGTGGTAGAACGATTAAGGCTTATGCTGATAGATGATGAGGAAACCAGGAATTTTATGGGGGCTAATGGGTTTATTGAAGCACTTCTGCTGTTTTTACAATCCGCTTTGCATGAAGGGAATTTGATGGCTCAGGAAAGTGGAGCAATGGCCCTCTTCAACCTGGCTGTAAACAACAACAGAAATAAGGAAATTATGGTATCGTCGGGAGTATTGCCATTGTTGGAGGAGATGATTTCTAACACCAGTTGTTATGGTTGTGCAACTGCCCTGTATCTGAATCTCTCTTACCTTGAAGAAGCAAAGCCTATGATTGGTATGAGTCAGGCTGTTCAGTTCCTAACCCAGCTTCTTCAAGATGACTCTGGTGTTCAATGCAAGCAAGATTCTCTTCATGCTCTCTATAATCTTTCTACTGTGTCCTCCAATATTCCGTACCTCCTTTCATCAGGCATCATTAATGGCCTACAATCCCTTCTTGTAGGTCAGGATAATTGCTTGTCGACAGAAAAATGCGTAGCTGTTTTGATAAACTTGGCTACTTCTCAAGTCGGAAGAGAAGAAATGGTTTCAAATCCTGGACTCATTAGCGCATTGGCTTCGATAATGGACATTGGTGAGCTCCTAGAACAGGAGCAAGCTGCGTCTTGTCTCCTAATTTTGTGTAACAGAAGCGAGAAATGTTGTGAAATGGTCTTGCAGGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCAAGAGGGAGAGAAAGAGCTCAAAAACTCTTGATGCTGTTCCGAGAGCAACGACAACGAGAGCATTCACAAGTTGAGACACACCAGTGTACTCCTGAAACTAGTGATTTGTCTACATCACCTGCAAAAGCGAAACCGCAATGCAAGTCTATGTCTAGAAAAAAGTCAGGAAAAGCTTTTAGCTTTTTCTGGAAAACCAAAAGCTATTCCCTTTCCCAGTGTTAA 2295 0.4105 MDVADVEENLFAASDAKLHGEMCKALSVIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKAKNVLLHCSDCSKLYLAITGDSVLLKFEKVKCALEDGLKRVEDIVPQSIGFQIQDILDELVSVVFALDTSEKQVGDDLIAMLQQERKFNCCNDSNELESFHQATIRLGITSFRAALTERRALKKLIERARAEEDKRKESIVAYLLYLMRKYSKLFRSEVLDDNDSQGSGPCSPIGQGSIENGVSVGHYQAFDRQVSKLSSFNFKPNNRKSGQMPVPPEELRCPISLQLMYDPVIIGSGQTFERVCIEKWFSDGHNTCPKTQHQLSHLCLTPNYCVKGLVASWCEQNGVPIPKSPPESLDINYWRLALSESESTNSRSVNSVSACKSKGVKVVPLEENGILEELEQNGTESLSTKEEDADQYLHFLKVLTEGNNWKWKCEVVERLRLMLIDDEETRNFMGANGFIEALLLFLQSALHEGNLMAQESGAMALFNLAVNNNRNKEIMVSSGVLPLLEEMISNTSCYGCATALYLNLSYLEEAKPMIGMSQAVQFLTQLLQDDSGVQCKQDSLHALYNLSTVSSNIPYLLSSGIINGLQSLLVGQDNCLSTEKCVAVLINLATSQVGREEMVSNPGLISALASIMDIGELLEQEQAASCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTSRGRERAQKLLMLFREQRQREHSQVETHQCTPETSDLSTSPAKAKPQCKSMSRKKSGKAFSFFWKTKSYSLSQC 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0573 764 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lal19g0573 764 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 755 - -
Lal19g0573 764 SUPERFAMILY ARM repeat 428 706 IPR016024 -
Lal19g0573 764 MobiDBLite consensus disorder prediction 718 736 - -
Lal19g0573 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Lal19g0573 764 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lal19g0573 764 Coils Coil 175 195 - -
Lal19g0573 764 PANTHER U BOX DOMAIN-CONTAINING 1 755 - -
Lal19g0573 764 Gene3D - 404 723 IPR011989 -
Lal19g0573 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Lal19g0573 764 CDD RING-Ubox_PUB 283 324 IPR045210 -
Lal19g0573 764 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lal19g0573 764 SUPERFAMILY RING/U-box 275 355 - -
Lal19g0573 764 MobiDBLite consensus disorder prediction 710 741 - -
Lal19g0573 764 SMART arm_5 539 580 IPR000225 GO:0005515
Lal19g0573 764 SMART arm_5 500 538 IPR000225 GO:0005515
Lal19g0573 764 SMART arm_5 454 498 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0573 Lal-Chr19 8225116 8230601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0573 1 761 U-box Gene Family AT1G24330 63.789 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0573 - - gmx:100794099 1217.99