Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0571 ATGCAGTCAGATTCAGACTCAGACGGGTCTCACGTATCAACAACTCCTCCAAGACAACAACCTCCTTCACCATCTCTTCCAATTTCAAAAAAATCAAGAATCCGAACAAAACCATCAAAACCCAAACCACTCCTAACCCGACCCGACAAACCCGACCCGATACCCGAACCGATCCACCAAATCCAAGACCCTTTCTGCGTTCCTTCTTCCCTTCCGTTCCGAATTCGTCGATCCTCTGATTGCGTTCCGTCGCAGTCAACTTCCCACTCTATCGAAACCCTACCCGCAGGGTTCTTCGCGAAATCGGTTTCCTTCTCGAAGATTCGAAGAACCTTTGTTGATTTTGAAGATTCTGGAAAAGAACCAGTTCTTAATTATGTTTCCGATGCAGCAGTCTCTGGCGTTGATATGAGGCGAGGCGAAGAAGAAGGTCTTGCTGCTAGGAACCCAGTGAAGCTCTTAAAGAGGCATCCTAATTTAATAGGTGCTAATGCACCAATGCCGGCTGCGAAGCTGAGAAAATGTGGCGGTGAGGGGAACTTCGTCAGGTTAAACTTGAATGGCAAGAAAAGAAAGTTTGTGAACAAAGGGTGGAAGAAAAATGGGAAATTTCGTGGTAGTAAAAGGTACTGGAAAAGCAAAGTTAAATTGGAACATGAAGGCGAGGGGGATCAAGTGCAGCCAGAATTTGAGGAGGAAGGGTTGGTTGTAGAAAATGCAAAAGACAAGCAAAGAGGGTCTTGTAAGACAAAAGAGGTTAGCTGCAACCAGTTGGAGGAGATGGTGTCATCAGCACGAGTTGACCCTTCGGATGAGAACTTGGTGAAGTTGCTGAAATTAATTTATGGTTATGAATCTTTTCGAGATGGGCAGTTAGAAGCAATCAAGATGGTTCTTGCTGGGAAGTCAACTATGCTTATTTTGCCAACTGGTGCAGGGAAGTCGCTGTGCTATCAGTTGCCTGCTCTAATTTTGCCGGGGATTACCCTTGTTGTAAGTCCATTGGTAGCCTTGATGATTGATCAGCTAAGGCAATTGCCTCCTGTTATTAAGGGTGGTCTTCTATCTAGCAATCAGACACCTGAGGAAGCCTCCAAAACACTCAACCTGCTTCGACAGGGTGCAATAAAGGTGCTTTTTGTTTCGCCAGAGCGGTTCCTGAATGAAGAGTTTCTGTCTATTATTTCTGTTTTGTCAACGATTACACTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCACACAATTTCCGACCTTCATTCATGAGACTCAGAGCATCTTTGCTTCATAAAAAGCTTAATGTGGGTTCTATTCTTGCAATGACAGCAACTGCTACAACCAAAACTTTAGATTCTATCATGTCTGCTCTAGATATTCCTTGTACAAATCTTATTCAAAGGGCACAGTTAAGAGACAATTTGCGTTTATCAGTGTCTTTGGTCAGAAATAGGCAATATGAAACTGATCAAATTAGCAGATACTTGAATGACAATAATATATTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAATTACGTACAGGAGTTGTTTAGTTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGAGTAGACAAAAGAGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTTTGGAGGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCCATTGTCACCTACTTTATGATGATGAGACTTATTTCAAACTTCGTAGTCTAATGCATAGTGAAGGAGTAGATGAATATGCAGTGAACAAATTTCTGCGTGAAGTGTTTCCTGTTGACAAAAACTCCCATGGGAAAATCTTTTCATTGGTGAAAGAGTCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGCATCAGTCAATTTGCATTTCTTCTATGCATTTCCAGACAATAACTCAGTACAACTCTCTCTGGTTGTTTATAAGATAATAGATATGCAAATGCCAGAAATAAGAGCGGTTCTTGTGATGCTCACACTTTTAACCCGCTTGGAATTGGGAGATGTGCAGTACTTGCATTTACTTCCACAGACAAATGCAACTTGCGCTTTGAATTTTCATAAGACTACTCCACTGTTGCTCGCCCAAAAGGTTTCTGCTGTTTCCGCAATTCTAAAAAGATCTGAAAATAAGCAAGGGCTATATGTTTTTGACATTCCAACTGTGGCAAATGACATGGGGGTTACAGCAGTTGAGCTAACTAATCAGTTGTACGATCTTAAGTTGAAGGGAGAAGTAACTTATGAGATGAAGGACATGGCCTATTGTTATCGGATTGTTGAAGTCCCAATAGACTTGTTGTCTCTATCAGTCAGTATTACCCAATGGTTATCAGAAGTTGAAAGTTGTAAGGTACGAAAAGTAGATGCAATGTTTAATGCAGTCTATTTCGCATTAAATTTATGTGATAAGATGAACGGTTGCAATGGTGCCGATCACACTCCATGCTTGCAAATGAAAACACTGGATTACTTTGCTGGACTTGATATTCATGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTATTTTTACAGAGCAATTCACAGGCTCGGTTTACACCAAGAGCCCTTGCGAGGATAATGCATGGAATTGCAAGTCCAGCCTATCCTTCTACAATTTGGTCTAAAACCCATTTCTGGGGAAGGTATAAGCATATAGACTTTCAGGTGATTATGGAAGCAGCAAAGGCAGAACTTAAGAACTTTGTTGGGAAAGATGTACTCTAG 2811 0.4166 MQSDSDSDGSHVSTTPPRQQPPSPSLPISKKSRIRTKPSKPKPLLTRPDKPDPIPEPIHQIQDPFCVPSSLPFRIRRSSDCVPSQSTSHSIETLPAGFFAKSVSFSKIRRTFVDFEDSGKEPVLNYVSDAAVSGVDMRRGEEEGLAARNPVKLLKRHPNLIGANAPMPAAKLRKCGGEGNFVRLNLNGKKRKFVNKGWKKNGKFRGSKRYWKSKVKLEHEGEGDQVQPEFEEEGLVVENAKDKQRGSCKTKEVSCNQLEEMVSSARVDPSDENLVKLLKLIYGYESFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPPVIKGGLLSSNQTPEEASKTLNLLRQGAIKVLFVSPERFLNEEFLSIISVLSTITLVIDEAHCISEWSHNFRPSFMRLRASLLHKKLNVGSILAMTATATTKTLDSIMSALDIPCTNLIQRAQLRDNLRLSVSLVRNRQYETDQISRYLNDNNILAKSYHSGITAKERNYVQELFSSNKIRVVVATVAFGMGVDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSHCHLLYDDETYFKLRSLMHSEGVDEYAVNKFLREVFPVDKNSHGKIFSLVKESASRRFDMKEEASVNLHFFYAFPDNNSVQLSLVVYKIIDMQMPEIRAVLVMLTLLTRLELGDVQYLHLLPQTNATCALNFHKTTPLLLAQKVSAVSAILKRSENKQGLYVFDIPTVANDMGVTAVELTNQLYDLKLKGEVTYEMKDMAYCYRIVEVPIDLLSLSVSITQWLSEVESCKVRKVDAMFNAVYFALNLCDKMNGCNGADHTPCLQMKTLDYFAGLDIHDFCKKIGQSSPFLRADIKVFLQSNSQARFTPRALARIMHGIASPAYPSTIWSKTHFWGRYKHIDFQVIMEAAKAELKNFVGKDVL 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0571 936 SMART helicmild6 490 571 IPR001650 -
Lal19g0571 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 585 IPR027417 -
Lal19g0571 936 MobiDBLite consensus disorder prediction 1 16 - -
Lal19g0571 936 Gene3D - 464 639 IPR027417 -
Lal19g0571 936 Gene3D - 256 463 IPR027417 -
Lal19g0571 936 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 464 IPR014001 -
Lal19g0571 936 MobiDBLite consensus disorder prediction 1 63 - -
Lal19g0571 936 Pfam Helicase conserved C-terminal domain 488 570 IPR001650 -
Lal19g0571 936 PANTHER DNA HELICASE RECQ FAMILY MEMBER 51 859 - -
Lal19g0571 936 MobiDBLite consensus disorder prediction 42 56 - -
Lal19g0571 936 Pfam DEAD/DEAH box helicase 289 451 IPR011545 GO:0003676|GO:0005524
Lal19g0571 936 PANTHER ATP-DEPENDENT DNA HELICASE Q4 51 859 - -
Lal19g0571 936 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 467 618 IPR001650 -
Lal19g0571 936 SMART ultradead3 283 480 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0571 Lal-Chr19 8157497 8167049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0571 471 572 Eukaryotic Initiation Factors Gene Family AT3G19760 33.010 6.14e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0571 K10730 - gmx:100811214 1189.48