Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0549 ATGAAGCTCTCTTCAGCTGGTTTTAGTCCTCCTCCCGAGGAAGGAGAGAAGCAAGTTTTGGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCTGCTATACGAAGCTGCGTGGTCTACTTTCCACAAGGTCATAGTGAACATGTTGCAGTGTCAACCAACAGGGAAGTGGATGGCCATATGCCCAATTATCCAAGTTTACCTCCCCAACTTATTTGTCAACTTCATAATTTGACTATGCATGCAGATACTGAGACTGATGAAGTCTATGCACAGATGACCTTGCAACCTCTTAGTCCTGAAGAGCAAAACGAGGCATATATTCCAGCAGATTTGGGCACTCCTAGTAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGACACAAGCACTCATGGAGGATTTTCGGTTCCTCGCCGGGCAGCTGAAAAAGTGTTTCCTCCTTTGGACTTCTCCCAACAGCCTCCTTGTCAAGAGTTAATGGCAAGGGATTTGCATGGTCATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGTTGTTTATCTGGAATGAAAAGGGTCAATTGCTTCTTGGAATCCGGCATGCTAATCGATCACAACCTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGATTCACCATTTTCTACAACCCGCGTTCCAGCCCATCAGAATTCGTCATACCCTTCGCGAAGTATGTTAAATCTGTCTATCATACTCAAGTTTCAGTTGGCATGCGTTTCAGGATGCTGTTTGAAACAGAGGAATCTAGTCTGCGGCGATACATGGGCACAATAACTGGCATTAGTGACTTGGATCCTGCTCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAGTCCACAGCAGGAGAGAGGCAACCTCGAGTGTCTCTATGGGAAGTTGAGCCATTGACAACATTTCCGATGTATCCATCTCCGTTCCCCCTTAGGTTTAAGAGACCATGGCCTCCCGGACTGCCTTCATTCCATGGCATGAAGGATAATGATTTTGGCATGAATTCTTCACTACTGTGGCTTCAAGACACCACGGATAGAGGGCTTCAGTCTCTTAACTTTCAGGGAATTGGTGCTAATCCTTGGATGCAGCCAAGGCTTGATCCCTCCATGGTGAATTTTCAAAACGATATGTATCAATCTATGGCTGCCGCTGCACTTCAGGATATAAGGACATTAGACCCTTCCAAACAACATCCTACTTCTTCACTTCAATTTCAGCAACCACAGCACATCCCCAACAGGATTCTTGTTTCAATGCAGACACATATGTTGCAGCAGTCTCAACCTCAGCATGACTTTCCAAATAATCAAGAAATTCAGCGTTCATCTCAAGCTCAAACTCAAAATCAACTGCATCCTCAGCAACATCTACAGCATCAACACTCATTTAATAATCAGAATCAGCACCAGCAACAACAAAAACAACGACAACAGCAACAGCAACAAATGGTATATCATCAGCAGATTTCAAGTGCTGTTTCTCAGTTTGTTTCAGTACCTCAATCTCAGTCACCACCCATGCAAGCTATTTCTTCACTGTGCCATCAGCAAAGTTTTTCTGATTCAAGTGGGAACTCTGCGGCTACTGCTATTGCTTCTCCCCTGCACAACATCATGGGTTCATTTCCCCAGGATGAAACATCCCACCTTCTCAACCTTCCTAGAACAAGTTTTTGGATTCCGGTTCAACATTCAACTGCATGGCCCCCCACCAAGCGTGTTGCAGTGGACCCACTCCTTTTATCTGGAGTATCTCTATGTCAAGTGGACCAGATAGGGCAACCACAAATTACCATGTCTGAAAATGCTGTTACATTGCCGCCCTTTCCTGGTAGGGAATGCACCTTAGAAGGGAGCACTGATCCACAAAACAATTTTTTGTTTGGTGTTAATATAGACCCCTCTTCTCTTCTGATCCATAATGGGATGTCAAACCTTAAAGGGGTCAGCATCAACCGTGACTCGTTATCCATACCTTTTCAGCCTTCTAACTATCTGAATACCACAGGAACTGATTCTTCATTGAATCCTGGAATGACACACATCATTGATGCACCGGACTTCCTGCAGACTCCAGAAAATGGGGGCAGAGGAAACTCTCCAACCAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCTCTAAATTCACCAACTACCATGAGCTGCGCTGTGAGCTTGCTCGCATGTTTGGCCTGGAAGATGAGTTGGAGAACCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGCGATGGTCCTTGGCCGGACTTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCATGAAGTGCAGCAAATGGGAAACAATGGCCTGGAGCTTCTGAACTCGGTTCCGATTCAGAGGCTCTCCAATGACATCTGTGATGACTACACTGGCCATGACGACCAAAGAAGTTTAAGCAATGGAATAGAGTACTGA 2676 0.454 MKLSSAGFSPPPEEGEKQVLDSELWHACAGPLVSLPAIRSCVVYFPQGHSEHVAVSTNREVDGHMPNYPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLSPEEQNEAYIPADLGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELMARDLHGHEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKGQLLLGIRHANRSQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRSSPSEFVIPFAKYVKSVYHTQVSVGMRFRMLFETEESSLRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEVEPLTTFPMYPSPFPLRFKRPWPPGLPSFHGMKDNDFGMNSSLLWLQDTTDRGLQSLNFQGIGANPWMQPRLDPSMVNFQNDMYQSMAAAALQDIRTLDPSKQHPTSSLQFQQPQHIPNRILVSMQTHMLQQSQPQHDFPNNQEIQRSSQAQTQNQLHPQQHLQHQHSFNNQNQHQQQQKQRQQQQQQMVYHQQISSAVSQFVSVPQSQSPPMQAISSLCHQQSFSDSSGNSAATAIASPLHNIMGSFPQDETSHLLNLPRTSFWIPVQHSTAWPPTKRVAVDPLLLSGVSLCQVDQIGQPQITMSENAVTLPPFPGRECTLEGSTDPQNNFLFGVNIDPSSLLIHNGMSNLKGVSINRDSLSIPFQPSNYLNTTGTDSSLNPGMTHIIDAPDFLQTPENGGRGNSPTKTFVKVYKSGSFGRSLDISKFTNYHELRCELARMFGLEDELENPVRSGWQLVFVDRENDVLLLGDGPWPDFVNSVWCIKILSPHEVQQMGNNGLELLNSVPIQRLSNDICDDYTGHDDQRSLSNGIEY 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0549 891 SUPERFAMILY DNA-binding pseudobarrel domain 113 256 IPR015300 -
Lal19g0549 891 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Lal19g0549 891 PANTHER AUXIN RESPONSE FACTOR 1 875 - -
Lal19g0549 891 SUPERFAMILY CAD & PB1 domains 761 839 - -
Lal19g0549 891 CDD B3_DNA 126 226 IPR003340 GO:0003677
Lal19g0549 891 SMART B3_2 127 229 IPR003340 GO:0003677
Lal19g0549 891 Pfam AUX/IAA family 761 849 IPR033389 -
Lal19g0549 891 Gene3D - 760 853 - -
Lal19g0549 891 ProSiteProfiles PB1 domain profile. 764 848 IPR000270 GO:0005515
Lal19g0549 891 Gene3D - 291 363 - -
Lal19g0549 891 Gene3D - 125 228 IPR015300 -
Lal19g0549 891 MobiDBLite consensus disorder prediction 483 546 - -
Lal19g0549 891 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal19g0549 891 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 875 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal19g0549 891 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0549 Lal-Chr19 7752990 7761008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0549 1 489 B3 DNA Binding Superfamily AT1G30330 80.162 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal19g0549 AUX_IAA 7.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0549 - - gmx:100777789 1433.7