Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0312 ATGGCTGATTCAGCAAGAAATGAAACTGATGAGGTTGTTGTAAATGTCAAGGACAATGGTTCCTCCAAAACATGTGAAGGCTCAAACAGCTGTGTGCCTTTCTTGCAGAAGTTGGTAGCTGAGGTGGTAGGAACATATTTCTTAATATTTATAGGGTGTGCATCAGTGGTAGTGAACAAAGGGTATGATAATGTGGTAACACTTCCTGGGATTGCAGTTTCTTGGGGTTTGGTTGTGATGGTTATGATTTATTCTGTTGGCCACATTTCTGGTGGCCATTTCAATCCTGCTGTTACCATTGCTTTTGCTAGCACCAGAAGGTTTCCATTGTTGCAGGTACCAGCTTATGTAGCAGCTCAACTGCTTGGAGCCACACTTGGAAGTGGATCTCTTAGACTAATATTTACAGGGAGTCATGACAAGTTTGCAGGAACACTACCAACTGGGTCAAACCTGCAAGCTTTTGTATTTGAGTTCATAATCACTTTTGCACTTATGTTTGTCATATCTGGGGTTGCTACTGATAATAGAGCAATTGGTGAATTGGCTGGGATTGCAATTGGCTCTACCATACTCATGAATGTGATAATTGCAGGGCCAGTGACAGGAGCATCAATGAACCCAGTAAGAAGCTTAGGTCCTGCATTTGTACACAATGAATACAAAGGAATATGGATATATATAGTATCACCTATTCTTGGTGCCATCGCTGGAGCATGGGTTTACAACCTCATTAGATTCACAGATAAACCATTGCGTGAGATTACCAAGAGTGCCTCTTTTCTCAAAGAGAGTAAGAGTAAACGTGATAACACCAAATGA 822 0.4136 MADSARNETDEVVVNVKDNGSSKTCEGSNSCVPFLQKLVAEVVGTYFLIFIGCASVVVNKGYDNVVTLPGIAVSWGLVVMVMIYSVGHISGGHFNPAVTIAFASTRRFPLLQVPAYVAAQLLGATLGSGSLRLIFTGSHDKFAGTLPTGSNLQAFVFEFIITFALMFVISGVATDNRAIGELAGIAIGSTILMNVIIAGPVTGASMNPVRSLGPAFVHNEYKGIWIYIVSPILGAIAGAWVYNLIRFTDKPLREITKSASFLKESKSKRDNTK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0312 273 CDD MIP 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 TIGRFAM MIP: MIP family channel proteins 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 Pfam Major intrinsic protein 32 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal19g0312 273 Gene3D Glycerol uptake facilitator protein. 2 257 IPR023271 -
Lal19g0312 273 PANTHER AQUAPORIN NIP2-1 3 265 IPR034294 -
Lal19g0312 273 SUPERFAMILY Aquaporin-like 33 256 IPR023271 -
Lal19g0312 273 PANTHER NODULIN-26 3 265 - -
Lal19g0312 273 ProSitePatterns MIP family signature. 93 101 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0312 Lal-Chr19 3292295 3295198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0312 3 263 Major Intrinsic Protein MIP AT5G37810 59.108 5.77e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0312 K09874 - gmx:100813448 416.387