Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0300 ATGGGAAATTACAAGTTCAAGTTATCACATATGATACCCAATGCTTGGTTTTACAAGCTTAGAGACATTGGAAGAACAACAAAACAAAGCACCATTTCTTCTAGGAAGAAAAAACAATCTCAATTAGCCTCAACTACTACACAAAAATCACCAAAACCAAGAAAATCATACTACTTTACAAGAGAGCTTGATCCAACTAGCATTAAAATCTACACCCCAAAATTTTCCCCTGACCCACCAAGAAAATCATCCAAACAAAGAAGAACAAAGAAAAGAACAACTACAAAGACTTATTCACCAAAAGTTGTTAACTCTTCTGTCTCTTCTGGTTGTAATTGTCACACTACACTTGATTCTCCTCCACATGAGTACTCATACTCTTCTTCTCAATTTGATAGCTCTACTGAATCAGAATTTCCTGACCCAGAATTCAGAACTGACCGTGTTCTTCTTCCCATTGAGTCTTCTTTTGATGAAATGGTTTCATTGTCCACTAACTCTAGTAGCTGCAAGCAAAAAAACTGCAACCAAAACAACAGCAGCAGCAGCAACAACAACGATATCGTAATCGATGTGGACAAGAATTCTCTAGCAAAAAGAAAAGATGGGTATGAATTTGATTCATTCTCAAAGGTTGAGTTGCCTCCAATTATAACCAAGCAAGTTATAAATGATGATGTTTCACAAAAAGAAACAAAACCCAGAGAACAAAAACACAGCATGAAAGGGTCTATGAAGGTTAAAATTGTGAAGGAAAACACATCAACAATCAAAGAACATAGAAATTCCCCTGTTAGGAAATTCTCCATGAGTTCTTCAAAGGTGAAAGTTCATGTCAATTCACCAAGGATTGAAAGAAGGAAGGTCCAGTTATATGGAAAGAAAATCGCGCCGAGTTCAAGCTCCCGGAGAAGCCTTTCGGATAGCTTTGCAATTGTGAAATCATCATTTAATCCTCAAAAGGATTTCAGAGAATCAATGTTGGAGATGATTGTGGAGAACAACTTAAGAGCTTCAAAGGACTTAGAAGATCTTCTTGCTTGTTACCTTTCTCTTAATTCAGATGAGTATCATGACATTATTATCAAAGTCTTCAAGCAAATATGGTTTGATTTCACAGAATCAAAGTAG 1131 0.3616 MGNYKFKLSHMIPNAWFYKLRDIGRTTKQSTISSRKKKQSQLASTTTQKSPKPRKSYYFTRELDPTSIKIYTPKFSPDPPRKSSKQRRTKKRTTTKTYSPKVVNSSVSSGCNCHTTLDSPPHEYSYSSSQFDSSTESEFPDPEFRTDRVLLPIESSFDEMVSLSTNSSSCKQKNCNQNNSSSSNNNDIVIDVDKNSLAKRKDGYEFDSFSKVELPPIITKQVINDDVSQKETKPREQKHSMKGSMKVKIVKENTSTIKEHRNSPVRKFSMSSSKVKVHVNSPRIERRKVQLYGKKIAPSSSSRRSLSDSFAIVKSSFNPQKDFRESMLEMIVENNLRASKDLEDLLACYLSLNSDEYHDIIIKVFKQIWFDFTESK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0300 376 MobiDBLite consensus disorder prediction 167 187 - -
Lal19g0300 376 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 3 374 - -
Lal19g0300 376 MobiDBLite consensus disorder prediction 122 137 - -
Lal19g0300 376 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 374 IPR038933 GO:0045892
Lal19g0300 376 MobiDBLite consensus disorder prediction 226 244 - -
Lal19g0300 376 Pfam DNA-binding domain 1 40 IPR025830 GO:0003677
Lal19g0300 376 MobiDBLite consensus disorder prediction 223 244 - -
Lal19g0300 376 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 311 372 IPR006458 -
Lal19g0300 376 MobiDBLite consensus disorder prediction 122 143 - -
Lal19g0300 376 MobiDBLite consensus disorder prediction 27 106 - -
Lal19g0300 376 ProSiteProfiles OVATE domain profile. 312 371 IPR006458 -
Lal19g0300 376 MobiDBLite consensus disorder prediction 27 54 - -
Lal19g0300 376 Pfam Transcriptional repressor, ovate 316 371 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0300 Lal-Chr19 3103857 3104987 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal19g0300 Ovate 4.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0300 - - aprc:113850281 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0806 14 10073763 10074923 Lal19g0300 19 3103857 3104987 LSH
Lal1g2302 1 24947316 24948545 Lal19g0300 19 3103857 3104987 PCT
Lal19g0300 19 3103857 3104987 Lal1g2302 1 24947316 24948545 PCT