Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0290 ATGCACTCGCCTTCTCTCTCTTTCGTCTTCGCTTTCGTTATCTCCGGTCACCGTCAATTCAAATTCACCCTTTTCTCTTTCTCCGGTCATATTTCCGACGAGTCTCCGATCAAACCTCACTTCACTTACACCTCCGCAAAATCAAATCCAAAACCACACCACCGCCACCACTATAAAAAAACACCGAACAACGAAACCGCTTCTAAGGAACTTGTAGTAACCGCTACTACTAACTCGAGCTTCGTTCTTCGGTTGAATTTCGGTATGTGTGCTTTTCCGTTGCTTGATTTTTATTCCTCTGGTTCGTTGAGTGAAGTGGAATTGAGGTTGAAAATGGAGTCAAGGATTTGCAAGAACGTGGCGTGTGCCGTCACAACGTCGATTCAGTGGCGAAGAGGTTGGGCCTTGCGATCCGGTGAATTCGCTGATCTATGTGATAAATGCGGTTCCGCTTATGAACAATCAACATATTGTGATGTGTTTCATTCAAACGACTCTGGTTGGAGAGAGTGCACTTTTTGTGGAAAGCGACTCCATTGTGGATGTGTTGTCTCTATGTGTCAGCTTGAGTTACTAGATACCGGTGGTGTAAGCTGTGTAAATTGCGCAAGGAATTTAGGAACTCAACCTGTTGCAACTACTGAAAAGCCTAATGAGTCTGAGACTTCAAAGGTAAAAAATGTCAGTGAACAGAACTTCATATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAATAGGGAATTATGCATTGAACCATGGGCTGAGATGGTGGCTCAAACCACATAATGCTGCCACAAGTGGGACTTCTGCAGAAATAAAAGTGGAAGAAGTTTCACCTTCGATTGAAAATATTGAAAACACTTTGATATCACAACTTCCTCCTGAGTCTAATGGATCATCTGAGGCTGCCAAAGAAGATAACAATATGTCAAACATGGAAATGCAAGATGTATATGAACCATTGACACAGACAACTATGACTCGTGCTGCTCCATTAGGAAACTCAAATCCCTTTCAAACAGCCATTACTGATGAAAGAGAACAAAGTAAAACATCATCTCCACTTCTATCAGGGTCTAGGTCTCGCCAGCTATTACCTAAGCCCTCTAGGTCAACTCTTACCGCAGGCTTAAAGGCAAATATACGCATGGCTTCCCAGACTCGTGTAGCAAGGCCTCCTGCTGAAGGACGGGGAAGGAATCAGTTACTTCCCCGTTATTGGCCTAGGATTACAGATCAAGAGTTGCAGCAAATATCTGGAGGTTCAAATTCCACCGTCGTGCCACTCTTTGAGAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGATTTTACCAAAAGCTTGTGCGGAAGCCTATTTTCCTCCCATCTCTCAACCGGATGGTCTTCCTCTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTGTTCCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACTCCCTGCATCCAGTCTATGCAATTGCAAGCTGGGGATACTGTAACATTCAGCCGTATGGACCCTGAGGGTAAGCTTGTAATGGGGTTTAGGAAGGGAACAAATTCTGCAGCAATACAGGACACTCAACCATCTAATGTACCCAATGGTTCTCATTCAAGTGAAACTCCCTATTCTGGTCTTTATGGGAATTTATCTATATTAAGTGGTTCTGGCAATCTTGGGTCACAAAATGGGAATTCAGAAACTCACCTAAATGTGCTGTCTAAAAAATGGAATTCAGCTGGTGGTGACATGAACTTGCATAGTATTGAGATGCCCGGAAGCAGGAAAAGAGAAGGGATGAGTTTGCCACCTACGATGGTTCCTGAGAAGAAGAGCGCTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGAAAGCCAGGATGCAATGGAGCTGATACTTACTTGGGAAGAGACTCAGGACATGCTACATCCACCTCCAACAATTAAGCCAAGCATTGTAATGATTGAGGATCATGTAATTGAAGAGTATGAAGAACCTCCTGTCTTTGGTAAGACGAGTATATGTGTATCCCGCTCAACTGGGAAAAATGAGCAGTGGACACAATGTGATAGGTGCTCAAAATGGCGGAAGTTGCCGATTGATGTACTTGTTCCCCATAATTGGACATGCACGGACAATTTATGGGATCGGAATAGGTCTTCATGTTCTGCTCCTAACGAATTGAACCAAAGGGAACTGGATAATCTTCTGAGACTGAACAAGGAATTCAGCAAACAAAAAGTGGCAGCAAGCCCCAACCCGCAGGAACATAAATCTTCTGGACTGGATACTTTGGCGAACGCTTCAATACTTGGAGATGATGCAGGTGACCCTGGCAGCACGCAGGTGGCTACCACTACAAAACATCCTCGGCATAGACCTGGGTGCTCCTGCATTGTTTGTATCCAACCACCAAGTGGGAAGGGTAAACACAAGGCTACATGCACCTGCAACGTCTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCAGAAGTTGAAGCGTCAATCTGAACATGAAACAGAAGTAGACAGCACCTCTCATTTAACTCCAGTTGATGATTCGGAGAATGAAGCAAGGGTGCCTAATGAATTGGATTCGAGCAGTCAAGACCACGTGGCAGAAGCTGCCAAGGGACAACTACACTTGAATTGCCAACCTGGTGGTGAAGGCATGCAAGCCGGGGCAGACAATGTGGACATTATGAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACGAACATGAAGAAAAATGGTACTACTAGCTTGATATCGGAAGAACAAACTAATTCAGCATCAAATGCACAGGCACAGACACCCAATGAGAGTGAGGGAGGACATAATGATGATTACTGTACTGCTTCTGCTGCTCATGAGCATGAAAGCAGTCCTGAAGAGAACAATGAGCAAGATAAGGACCAGAAGAATTCACTCTCTTGA 2997 0.4418 MHSPSLSFVFAFVISGHRQFKFTLFSFSGHISDESPIKPHFTYTSAKSNPKPHHRHHYKKTPNNETASKELVVTATTNSSFVLRLNFGMCAFPLLDFYSSGSLSEVELRLKMESRICKNVACAVTTSIQWRRGWALRSGEFADLCDKCGSAYEQSTYCDVFHSNDSGWRECTFCGKRLHCGCVVSMCQLELLDTGGVSCVNCARNLGTQPVATTEKPNESETSKVKNVSEQNFISLANQLNVRGMQIGNYALNHGLRWWLKPHNAATSGTSAEIKVEEVSPSIENIENTLISQLPPESNGSSEAAKEDNNMSNMEMQDVYEPLTQTTMTRAAPLGNSNPFQTAITDEREQSKTSSPLLSGSRSRQLLPKPSRSTLTAGLKANIRMASQTRVARPPAEGRGRNQLLPRYWPRITDQELQQISGGSNSTVVPLFEKMLSASDAGRIGRLILPKACAEAYFPPISQPDGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKGTNSAAIQDTQPSNVPNGSHSSETPYSGLYGNLSILSGSGNLGSQNGNSETHLNVLSKKWNSAGGDMNLHSIEMPGSRKREGMSLPPTMVPEKKSARNIGSKSKRLLIESQDAMELILTWEETQDMLHPPPTIKPSIVMIEDHVIEEYEEPPVFGKTSICVSRSTGKNEQWTQCDRCSKWRKLPIDVLVPHNWTCTDNLWDRNRSSCSAPNELNQRELDNLLRLNKEFSKQKVAASPNPQEHKSSGLDTLANASILGDDAGDPGSTQVATTTKHPRHRPGCSCIVCIQPPSGKGKHKATCTCNVCMTVKRRFKTLMMQKLKRQSEHETEVDSTSHLTPVDDSENEARVPNELDSSSQDHVAEAAKGQLHLNCQPGGEGMQAGADNVDIMSLLEEANLPLETNMKKNGTTSLISEEQTNSASNAQAQTPNESEGGHNDDYCTASAAHEHESSPEENNEQDKDQKNSLS 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0290 998 MobiDBLite consensus disorder prediction 944 967 - -
Lal19g0290 998 MobiDBLite consensus disorder prediction 292 312 - -
Lal19g0290 998 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 114 950 - -
Lal19g0290 998 CDD B3_DNA 430 531 IPR003340 GO:0003677
Lal19g0290 998 Pfam CW-type Zinc Finger 701 743 IPR011124 GO:0008270
Lal19g0290 998 Gene3D - 410 536 IPR015300 -
Lal19g0290 998 SMART B3_2 432 532 IPR003340 GO:0003677
Lal19g0290 998 ProSiteProfiles B3 DNA-binding domain profile. 432 533 IPR003340 GO:0003677
Lal19g0290 998 MobiDBLite consensus disorder prediction 851 879 - -
Lal19g0290 998 Gene3D - 699 755 - -
Lal19g0290 998 MobiDBLite consensus disorder prediction 944 998 - -
Lal19g0290 998 Pfam B3 DNA binding domain 432 531 IPR003340 GO:0003677
Lal19g0290 998 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 114 950 - -
Lal19g0290 998 MobiDBLite consensus disorder prediction 604 629 - -
Lal19g0290 998 MobiDBLite consensus disorder prediction 851 890 - -
Lal19g0290 998 SUPERFAMILY DNA-binding pseudobarrel domain 429 532 IPR015300 -
Lal19g0290 998 MobiDBLite consensus disorder prediction 330 374 - -
Lal19g0290 998 Coils Coil 742 762 - -
Lal19g0290 998 MobiDBLite consensus disorder prediction 972 998 - -
Lal19g0290 998 MobiDBLite consensus disorder prediction 784 809 - -
Lal19g0290 998 ProSiteProfiles Zinc finger CW-type profile. 696 746 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0290 Lal-Chr19 2905235 2913462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0290 112 967 B3 DNA Binding Superfamily AT4G32010 46.667 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal19g0290 B3 9.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0290 - - gmx:100778833 1332.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0290 19 2905235 2913462 Lal19g0290 19 2905235 2913462 ECH
Lal14g0820 14 10294350 10303512 Lal19g0290 19 2905235 2913462 LSH