Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0279 ATGGACATTGTGCTTAGTTACATGTTTTCTCTTGTAATCCTTTTTTCTGTGTTCGTAAACCCTAGTTATAGTATCAATTTTAATTTTTTTAATGCGTCCGAAACTGGGAATCAGGATCAATGGCAAACAGCAACAGCTACATGGTACGGACCACCAAATGGTGCTGGATCGGATGGAGGTAATTGTGGATATGGTGACAGTGTGGAGAACCCTCCACTCTCTAAAATGATATCAGCTGGAGGTCCATCACTTTTCCAAGGTGGCAGCGGTTGTGGTGCTTGTTATGAGGTAAAATGCACAGAAAATGATGCATGCTCACGAAACCCTGTGCTGGTGGTCATAACTGATAATTGCCCTGGATGTCCGGAATCAGTGCATTTCGATCTGAGTGGCACTGCCTTTGGTTCAATGGCAAATCCAGGGAAAGCAGATCAACTTCGCAACGTTGGGCAGCTAAATAACCTTCAATACAGAAGGGTTCCATGTAATTTTGGAAAATCTATAGCCTTTACCATAGATGATGGTGCATCCCCATACTATTTTGCAACAGAAATTGAATATGAAAATGGAGATGGCAACATTGTAGAGATTGAGTTAAAGCAAGGAATAGAATCAAGTACATGGATTCCAATGTTTCGTTCATGGGGTGCAAAATGGGCATTGAACCCAGGTTTCATGTTGAATCCTCCATTCTCTCTTAAACTCACTGAGGCTGGAAAGGGTGACACCAAAAAGACCATTGTTGCTGAAAATGTTATTTCTATTAACTGGAAACCTGGCCAAGTTTATCGATCATTTGTCAATTTTTAA 810 0.4099 MDIVLSYMFSLVILFSVFVNPSYSINFNFFNASETGNQDQWQTATATWYGPPNGAGSDGGNCGYGDSVENPPLSKMISAGGPSLFQGGSGCGACYEVKCTENDACSRNPVLVVITDNCPGCPESVHFDLSGTAFGSMANPGKADQLRNVGQLNNLQYRRVPCNFGKSIAFTIDDGASPYYFATEIEYENGDGNIVEIELKQGIESSTWIPMFRSWGAKWALNPGFMLNPPFSLKLTEAGKGDTKKTIVAENVISINWKPGQVYRSFVNF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0279 269 SUPERFAMILY PHL pollen allergen 166 265 IPR036749 -
Lal19g0279 269 SUPERFAMILY Barwin-like endoglucanases 38 164 IPR036908 -
Lal19g0279 269 Gene3D - 164 269 IPR036749 -
Lal19g0279 269 SMART dpbb_1 77 150 IPR007112 -
Lal19g0279 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 265 IPR007117 -
Lal19g0279 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 167 IPR007112 -
Lal19g0279 269 PANTHER EXPANSIN-LIKE PROTEIN B1 3 269 - -
Lal19g0279 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Lal19g0279 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Lal19g0279 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Lal19g0279 269 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Lal19g0279 269 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Lal19g0279 269 Gene3D - 27 163 IPR036908 -
Lal19g0279 269 Pfam Expansin C-terminal domain 168 253 IPR007117 -
Lal19g0279 269 Pfam Lytic transglycolase 78 141 IPR009009 -
Lal19g0279 269 PANTHER EXPANSIN-B3 3 269 - -
Lal19g0279 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Lal19g0279 269 PRINTS Major pollen allergen Lol pI signature 99 109 IPR005795 GO:0005576|GO:0019953
Lal19g0279 269 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Lal19g0279 269 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Lal19g0279 269 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Lal19g0279 269 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Lal19g0279 269 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0279 Lal-Chr19 2820074 2823182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0279 30 269 Expansin Gene Family AT1G65680 56.790 1.04e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0279 - - gmx:100786475 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0279 19 2820074 2823182 Lal19g0279 19 2820074 2823182 ECH