Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0278 ATGACCGAGACAACACGGGTTCCATGTAATTTTGGAAAATCTATAGCCTTTACCATAGATAATGATGCATCCCCATACCATTTTGCAATAGCAATTGGATATAAAAATGCAGATGCTACCATTGTAGATGTTGATTTAAAGCAAGGAATAGAATCAAGTAAATGGATTCCAATGTTTCGTTCATTAGGTGCTGCAAGATGGGTATTGAACCCATGTACCAACTTGACTCCTCCATTCTCTCTTAAACTCACTAAGGCTGAAAAGGGAGACACCAAAAAGACCGCTGTTGCTGAAAATGTGATTCCTATTAACTGGAAACCTGGCCAAGTTTATCGATCATTTGTTAAATTTTAG 354 0.3757 MTETTRVPCNFGKSIAFTIDNDASPYHFAIAIGYKNADATIVDVDLKQGIESSKWIPMFRSLGAARWVLNPCTNLTPPFSLKLTKAEKGDTKKTAVAENVIPINWKPGQVYRSFVKF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0278 117 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 26 113 IPR007117 -
Lal19g0278 117 Pfam Expansin C-terminal domain 15 102 IPR007117 -
Lal19g0278 117 PANTHER EXPANSIN-LIKE PROTEIN B1 5 117 - -
Lal19g0278 117 SUPERFAMILY PHL pollen allergen 13 113 IPR036749 -
Lal19g0278 117 PRINTS Major pollen allergen Lol pI signature 17 32 IPR005795 GO:0005576|GO:0019953
Lal19g0278 117 PRINTS Major pollen allergen Lol pI signature 33 48 IPR005795 GO:0005576|GO:0019953
Lal19g0278 117 PRINTS Major pollen allergen Lol pI signature 89 106 IPR005795 GO:0005576|GO:0019953
Lal19g0278 117 PANTHER EXPANSIN-B3 5 117 - -
Lal19g0278 117 Gene3D - 13 116 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0278 Lal-Chr19 2804986 2805592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0278 6 117 Expansin Gene Family AT1G65680 42.478 1.03e-25 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0278 - - pvu:PHAVU_010G070900g 118.242