Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0276 ATGGAGAAGCACAAGTGTAAGCTTTGTTTCAGGAATTTTTCCAATGGAAGAGCGTTAGGAGGTCACGTGAGGTCTCATATGATGAACCTACGTGTCCCTCCTAAGCTCAATCAGTCATTATCATCACCATCACCACCATCAGTTCGACTCAGCTTCGAAGCTGAGTCGACATCGTCTCCATCCTCATCATCATCAGAAGATAATAAGAATCTCTCGTATGCCTTACGAGAGAACCCGAAGCGAAGCTTTCGACTTTCAGATCCTGAGTTTGCAGACACAGGCTCCATGATCCTTCAAGATAGAGAGAGCGAAACTGAGTCATCGAGAAACCCAACTCGGAAACGATCTAAAAGAGCATGGAAACTCGGTACCCTTGATCATCAACAATTAAGTAAGAATATGAAGTTTAGTATGCATTTTAATAAGAACGAATCTTTGAGTTCAGTTTCAGAAACAACCACAGAGGAAGATCTCGCTTTTTGTCTCATGATGTTATCTCGTGACAAGTGGAAGAGACAACAAGAATTGTACGAGGAAGAAGAACCCGAAGATGATGATGACGACGATGATGAAGATGAAGATGAAGAGAATTACGAATCGGACGAAGAAATAAAATCGTCAAAGACAATATTAACTAGGGTACGAGGTAAATACAAATGTGAAACATGCAACAAAGTGTTTCGATCTTATCAAGCATTGGGTGGACATAGAGCGAGTCATAAGAAAATCAAGACAATCTTAGAGGAACAACCAAAATCTGAGCATCATCTTAATGGAGCTAAGAAAATTCATGAATGTCCGATTTGTTTTCGGGTTTTTGCTTCAGGTCAAGCCCTTGGTGGACATAAGAGAACACATGTGATTGGTTCAGGAACGACAGTAACTACAACCGCGACCGCAATAACTTTCCCGGTTCCTAATTTCTCTAAGTTCGGAGATAGTTTGATAGATCTTAATCTCCCTGCCCCAATGGATGATGATGAAATTGAGGACTCTGCAGTTTCAGATGCAGAATTTGTCAAATCTCATTAG 1032 0.4089 MEKHKCKLCFRNFSNGRALGGHVRSHMMNLRVPPKLNQSLSSPSPPSVRLSFEAESTSSPSSSSSEDNKNLSYALRENPKRSFRLSDPEFADTGSMILQDRESETESSRNPTRKRSKRAWKLGTLDHQQLSKNMKFSMHFNKNESLSSVSETTTEEDLAFCLMMLSRDKWKRQQELYEEEEPEDDDDDDDEDEDEENYESDEEIKSSKTILTRVRGKYKCETCNKVFRSYQALGGHRASHKKIKTILEEQPKSEHHLNGAKKIHECPICFRVFASGQALGGHKRTHVIGSGTTVTTTATAITFPVPNFSKFGDSLIDLNLPAPMDDDEIEDSAVSDAEFVKSH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0276 343 MobiDBLite consensus disorder prediction 178 200 - -
Lal19g0276 343 MobiDBLite consensus disorder prediction 174 206 - -
Lal19g0276 343 SMART c2h2final6 4 26 IPR013087 -
Lal19g0276 343 SMART c2h2final6 218 240 IPR013087 -
Lal19g0276 343 SMART c2h2final6 264 286 IPR013087 -
Lal19g0276 343 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 341 IPR044303 GO:0006355
Lal19g0276 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 245 IPR013087 -
Lal19g0276 343 SUPERFAMILY beta-beta-alpha zinc fingers 218 286 IPR036236 -
Lal19g0276 343 MobiDBLite consensus disorder prediction 34 124 - -
Lal19g0276 343 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 341 - -
Lal19g0276 343 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lal19g0276 343 MobiDBLite consensus disorder prediction 34 72 - -
Lal19g0276 343 Pfam C2H2-type zinc finger 264 286 - -
Lal19g0276 343 Pfam C2H2-type zinc finger 218 242 - -
Lal19g0276 343 Pfam C2H2-type zinc finger 4 27 - -
Lal19g0276 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 286 IPR013087 -
Lal19g0276 343 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Lal19g0276 343 ProSitePatterns Zinc finger C2H2 type domain signature. 266 286 IPR013087 -
Lal19g0276 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Lal19g0276 343 Gene3D Classic Zinc Finger 215 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0276 Lal-Chr19 2786060 2787091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0276 1 329 C2H2 Transcription Factor Family AT3G60580 43.567 1.48e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal19g0276 zf-C2H2_6 7.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0276 - - aprc:113850450 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0276 19 2786060 2787091 Lal19g0276 19 2786060 2787091 ECH
Lal19g0276 19 2786060 2787091 Lal7g0187 7 2496443 2497906 ECH
Lal14g0825 14 10417298 10418933 Lal19g0276 19 2786060 2787091 LSH
Lal9g1348 9 14951023 14952252 Lal19g0276 19 2786060 2787091 PCT
Lal19g0276 19 2786060 2787091 Lal9g1348 9 14951023 14952252 PCT