Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0235 ATGGAAGCACGAGAAGGCGTAAGCTCGGGGGTTACAGTGATAGGAGCAGAAGCTCCATCACCTTATCATGTGGCACCAAGGAGTGAAGCTCCAAATCAGGTTCATGTCCCGGATGCAGCAGCAGCGGCGGCTGCGACCACCACTGCTGTTGTTGTCTCACCGGTGAGTGTGGGATCGGATGGAACTGCAGTTAAGAAGAAGCGCGGTAGACCAAGGAAATATGGACCAGATGGGTATGTTACTACTATGGCATTGTCACCAGTGCCGATCTCATCTTCAGGTCCACATTCCAACGACTTTTCATCCGGGAAACGGGGAAAGCCGTGTGGAATGGAATACAAGCAGTCAAAAAAATTCGGCCCGGATCATTTAGGTGACTTTAATGGATGCTCTGACGGTACAAACTTTATGCCGCATTTCATCACCATCAATGCTGGCGAGGATATTACAATGAAGGTTATATCCTTTTCTCAACAAGGACCTCGAGCTATATGTATATTATCTGCAAATGGTGTCATTTCAAATGTTACACTTCGTCAGCCCGATTCTTCCGGGGGCACGTTGACCTATGAGGGCCGGTTTGAGATACTTTCATTGTCTGGATCGTTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGTCTGGTGGAATGAGCGTCTCGTTGAGAAGCCCCGATGGTCGTGTTATTGGCGGTGGTGTTGCTGGTCTTCTTGTAGCTGCTGGTCCTGTGCAGGTGGTGGTCGGGAGTTTTCTACCAAGTAACCAGCAAGATCAGAAACCGAAGAAGCCGAAATCTGATTATGCATCGACCACAATTATTCAAGCCGTTGCTGTGTCTTCTGCACCACCTCCAACTAATACCGAAAAAGAGGATGTCATGGGTGGACATGTACTGCAAAATTCGACAACGCTTAACTCGAGCCTTACTCCACCCTCCGCATTTAGAAGAGAAAACTGGGTTAACATGCAAATTATGCCAGACTCGAGAAAGTCAGCAACTGACATTAATGTATCTTTGCCCGATAGTTAA 1032 0.4767 MEAREGVSSGVTVIGAEAPSPYHVAPRSEAPNQVHVPDAAAAAAATTTAVVVSPVSVGSDGTAVKKKRGRPRKYGPDGYVTTMALSPVPISSSGPHSNDFSSGKRGKPCGMEYKQSKKFGPDHLGDFNGCSDGTNFMPHFITINAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLRSPDGRVIGGGVAGLLVAAGPVQVVVGSFLPSNQQDQKPKKPKSDYASTTIIQAVAVSSAPPPTNTEKEDVMGGHVLQNSTTLNSSLTPPSAFRRENWVNMQIMPDSRKSATDINVSLPDS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0235 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 251 IPR005175 -
Lal19g0235 343 Gene3D - 138 274 - -
Lal19g0235 343 MobiDBLite consensus disorder prediction 58 113 - -
Lal19g0235 343 CDD DUF296 138 251 IPR005175 -
Lal19g0235 343 MobiDBLite consensus disorder prediction 85 100 - -
Lal19g0235 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 255 - -
Lal19g0235 343 ProSiteProfiles PPC domain profile profile. 133 274 IPR005175 -
Lal19g0235 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 342 IPR039605 GO:0003680
Lal19g0235 343 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0235 Lal-Chr19 2315511 2319820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0235 6 282 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.785 6.53e-100 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0235 - - gmx:100793726 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0886 14 11228481 11233314 Lal19g0235 19 2315511 2319820 LSH
Lal7g0165 7 1948081 1954169 Lal19g0235 19 2315511 2319820 LSH
Lal9g1736 9 19564912 19573499 Lal19g0235 19 2315511 2319820 PCT
Lal19g0235 19 2315511 2319820 Lal9g1736 9 19564912 19573499 PCT