LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal19g0227	ATGAGGAACGTAGTTCGAAAAAAGGGAGAAAGTAGCAAGAGGAGGAAACTAAAACCGAAGGGTAGCAAGAAGTGGGGACTAGATATGATTGGTAAGACCTATATTGATGTAAAAACTAAGAGGATAATGATTCCAGTGGAAGATGGAGACTTATATGTTGATTTAACCATCCCAAATGAAGATATGAACGTAAATGATGATTCTGATATGGATCTAGTAAGAGATTCTGGGAAAGATATAGAAAACCAATCAGGTTCTAGTGCTGGCCAAGGTAACCCTAATCCTACACCACCTTCTAGGGTACCCTCTGATATTAGGGATCAGAAGAAAGGGGAACCTAGAAACAAAAGGCAAGGTACTCGTTTGAGGAGAAACTCATCAAATGTTGAGATTAATGTGCCAAACTATGGAAAACACACTGTGCTGTGTTGGATGGTTGATATGGGAACAATTCAACCAAATGATAGGGTTTATTATATGGGAGAAAGTAATTCTGTGCTATTGGATGGTACAATAACAAGAGGTGGAATTCGTTGCAAATGTTGTCATGGAATAGTATCAGTATCTGAATTTGAAGCTCATTCTGGAAGCAAAAACTCTGATCCATATAGAAATATATGTTTGGAGGGTGGAACTTCTCTACTACATTGCATGCTAGAGGCATGGAATAAACAAGATGCATCTAAGCTCAAAGTTTCTAACTTTGTTTCTGTTGCAGATGAAGATTTCAATGATAGTGCATGTATTGTTTGTGGAGATTATGGAAACCTATTATGTTGTGATAGTTGTCCATCAACTTTCCATCAAAGCTGCTTGGGAATGGATGTAAATCATAACTCTTGTGTTGAGGCTGATGGTGGCATGATTCTTGAATCCGGTGATGCATTCTTTTGTGGAAACAAATGTCAAGAGGCATTTGGGAAACTTGAAAGGCTCATTGGGGTGAAACATGAAATTGGAGGAGGATATTCTTGGACTTTAATCCGTCGATCAAATGTTGACTTTGGTGATTTGCATATGAAATCTCATATGGTTGAATGCAATTCCAAGCTTGCTCTTGCATTATCTCTCATGGATGAATGTTTTCTACCTTGTATGGATGGCAGAACAAACATCAATGTGTTAAACAGTGTTCTATATAATTGTTGGTCAAACTTTAATCGTGTGAACTTTGAGAAATTTGTAACTGCAATTCTAGAAAAAGATGACAAAGTCATATGCGCTGCATCTATCAGGATCGATGGGAACCAAATAGCAGAGATGCCATACATTGCTACTAGCTATATGTATAGGCGACAAGGAATGTGTCGCCGACTAATGAATGCAATTGAATCGGCACTCAAACATTTAGACGTTGAGTTATTAGTCATACCGGCTATCTCAAAAGTTAAGAAAACTTGGATTTCTTCTTTTGGGTTTGAGCCAATTACATTGAAAACTCAACACCTGATAAGGGATATAAAACTGTTAGTGTTCCCTGGAGTAGAAAAGCTACAAAAAAGAATATGA	1509	0.3757	MRNVVRKKGESSKRRKLKPKGSKKWGLDMIGKTYIDVKTKRIMIPVEDGDLYVDLTIPNEDMNVNDDSDMDLVRDSGKDIENQSGSSAGQGNPNPTPPSRVPSDIRDQKKGEPRNKRQGTRLRRNSSNVEINVPNYGKHTVLCWMVDMGTIQPNDRVYYMGESNSVLLDGTITRGGIRCKCCHGIVSVSEFEAHSGSKNSDPYRNICLEGGTSLLHCMLEAWNKQDASKLKVSNFVSVADEDFNDSACIVCGDYGNLLCCDSCPSTFHQSCLGMDVNHNSCVEADGGMILESGDAFFCGNKCQEAFGKLERLIGVKHEIGGGYSWTLIRRSNVDFGDLHMKSHMVECNSKLALALSLMDECFLPCMDGRTNINVLNSVLYNCWSNFNRVNFEKFVTAILEKDDKVICAASIRIDGNQIAEMPYIATSYMYRRQGMCRRLMNAIESALKHLDVELLVIPAISKVKKTWISSFGFEPITLKTQHLIRDIKLLVFPGVEKLQKRI	502

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal19g0227	502	CDD	NAT_SF	398	457	-	-
	Lal19g0227	502	SUPERFAMILY	FYVE/PHD zinc finger	237	277	IPR011011	-
	Lal19g0227	502	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lal19g0227	502	PANTHER	PHD FINGER PROTEIN 12	18	273	IPR042163	GO:0003714\|GO:0045892
	Lal19g0227	502	PANTHER	PHD FINGER PROTEIN 12	278	502	IPR042163	GO:0003714\|GO:0045892
	Lal19g0227	502	SMART	PHD_3	247	303	IPR001965	-
	Lal19g0227	502	PANTHER	FINGER PROTEIN, PUTATIVE-RELATED	278	502	-	-
	Lal19g0227	502	PANTHER	FINGER PROTEIN, PUTATIVE-RELATED	18	273	-	-
	Lal19g0227	502	ProSiteProfiles	Gcn5-related N-acetyltransferase (GNAT) domain profile.	342	491	IPR000182	GO:0016407
	Lal19g0227	502	MobiDBLite	consensus disorder prediction	103	119	-	-
	Lal19g0227	502	MobiDBLite	consensus disorder prediction	59	129	-	-
	Lal19g0227	502	Gene3D	-	378	488	-	-
	Lal19g0227	502	MobiDBLite	consensus disorder prediction	7	21	-	-
	Lal19g0227	502	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	391	482	IPR016181	-
	Lal19g0227	502	Pfam	Tify domain binding domain	170	221	IPR032308	-
	Lal19g0227	502	MobiDBLite	consensus disorder prediction	79	94	-	-
	Lal19g0227	502	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	238	311	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal19g0227	Lal-Chr19	2092731	2105119	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal19g0227	121	500	PHD Transcription Factor Family	AT1G05380	44.496	2.86e-113	359

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal19g0227	-		-	gmx:100784172	446.432