Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0208 ATGGTGAACGTTCCAAAGACAAGGAAGACTTACTGCAAGAACAAGGAATGCAAGAAGCATACACTGCACAAGGTTACCCAATACAAGAAGGGTAAGGATAGCACTGCTGCTCAGGGAAAGCGTCGTTATGATCGCAAACAGTCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAGAAGGCAAAAACCACCAAGAAAATTGTCTTGAGGTTGCAGTGCCAGGGTTGCAAACATGTCTCCCAACGTGCTATCAAGAGGTGCAAGCACTTTGAGATTGGTGGTGACAAAAAGGGCAAGGGAACCTCTCTGTTCTAG 318 0.4654 MVNVPKTRKTYCKNKECKKHTLHKVTQYKKGKDSTAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQRAIKRCKHFEIGGDKKGKGTSLF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0208 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lal19g0208 105 MobiDBLite consensus disorder prediction 28 62 - -
Lal19g0208 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lal19g0208 105 Gene3D - 1 105 - -
Lal19g0208 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Lal19g0208 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Lal19g0208 105 MobiDBLite consensus disorder prediction 28 48 - -
Lal19g0208 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0208 Lal-Chr19 1903564 1905335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0208 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 93.333 2.24e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0208 K02929 - ini:109148838 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0921 14 11616487 11618114 Lal19g0208 19 1903564 1905335 LSH
Lal19g0208 19 1903564 1905335 Lal3g0028 3 159756 162909 PCT
Lal19g0208 19 1903564 1905335 Lal11g0067 11 453764 455610 PCT
Lal3g0028 3 159756 162909 Lal19g0208 19 1903564 1905335 PCT
Lal11g0067 11 453764 455610 Lal19g0208 19 1903564 1905335 PCT