Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0205 ATGTCAGATGTGGAGGAATATCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGGAAGTTAAAGGATGCATTTGATAAGTTTGGCAAGCTTATTGATGCAAAGGTGGTTGTTGACAAACTCTCTGGGCGATCTCGTGGTTTCGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCCATGAATGGGATGGATTTAGATGGCCGAACTATTACTGTTGATAAAGCTCAGCCTCAGCAGGGATCAACTAGAGATGATGGTGATCGCTTCCGAGACCGCGACCGTGGTCGTGATCGTGGTCGCGATCGCGATTATGGAGGTGGTCGAGGATCCAATGGTGGTGAATGCTTTAAATGTGGTAAACCTGGTCATTTTGCTAGAGAGTGCCCTAGTGAAGGGGAAAGAGGAGGAAGGTATGGTGGCAGGGAAAGTAAATATGGTGGAAGTAGTGCTGGTGGTCGCTATGGTCCTGATAGAAATGGAGATCGTTCGTCTGGTGGGAGCAACAGGGATGCTGGTAGTCGTGGAGAGTCTGGAAATGATCGACATCATCGTGATCATTCGAAATTGGAGGGGTTGCTGTTACTGCTTCAGCTTTCTCTTTTGTTCATGATGTTCTGGGGTTTGTTGTTTTGA 657 0.4612 MSDVEEYRCFIGGLAWSTSDRKLKDAFDKFGKLIDAKVVVDKLSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSTRDDGDRFRDRDRGRDRGRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGERGGRYGGRESKYGGSSAGGRYGPDRNGDRSSGGSNRDAGSRGESGNDRHHRDHSKLEGLLLLLQLSLLFMMFWGLLF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0205 218 MobiDBLite consensus disorder prediction 76 193 - -
Lal19g0205 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Lal19g0205 218 PANTHER - 1 176 - -
Lal19g0205 218 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lal19g0205 218 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Lal19g0205 218 Gene3D - 2 118 IPR012677 -
Lal19g0205 218 PANTHER TRANSFORMER-2-RELATED 1 176 - -
Lal19g0205 218 Gene3D - 119 179 - -
Lal19g0205 218 SUPERFAMILY Retrovirus zinc finger-like domains 105 142 IPR036875 GO:0003676|GO:0008270
Lal19g0205 218 MobiDBLite consensus disorder prediction 88 115 - -
Lal19g0205 218 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Lal19g0205 218 MobiDBLite consensus disorder prediction 128 148 - -
Lal19g0205 218 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Lal19g0205 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lal19g0205 218 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0205 Lal-Chr19 1893069 1897271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0205 10 93 Eukaryotic Initiation Factors Gene Family AT1G22760 34.524 2.21e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0205 - - gmx:100815224 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0924 14 11624449 11628390 Lal19g0205 19 1893069 1897271 LSH